View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_high_2 (Length: 582)
Name: NF18442_high_2
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 311 - 566
Target Start/End: Original strand, 11354121 - 11354380
Alignment:
| Q |
311 |
ttcatgtgcgcgctcgaaatcattctcacagggaagcaattaactaatgtatgccaaatgcaatgttgatgcgaaaattaatactaattgttagagggt- |
409 |
Q |
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| T |
11354121 |
ttcatgtgcacgctcgaaatcattctcacagggaagcaattaactaatgtatgccaaatgcaatgctgacgcaaaaattaataccgattgtcagagggtt |
11354220 |
T |
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| Q |
410 |
--ttatatcatgagatttatggggagattgtttatgttaatgagttttgacaccttaagaaaacacagaggaatcctttaaaacaaacaaaactatat-a |
506 |
Q |
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| T |
11354221 |
tattatatcatggaatttatggggagatggtttatgataatgagtttggacaccttaagaaaacacagaggaatcctttaaaacaaacaaaactctatgg |
11354320 |
T |
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| Q |
507 |
taagttttactaaaaaacaagtcaatcgcgtcgctcatagtttggctccagcatcatggt |
566 |
Q |
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| T |
11354321 |
taggttttactagaaaacaagtcaatcgcgttgctcattgtttggctccagcatcatggt |
11354380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 11353934 - 11354122
Alignment:
| Q |
17 |
attataaaggtgtcccatgacctcttgtctgccagaaatcgagctcacatggaggctgtttgggagaaagctagatgcaatacagaagttgatctggcaa |
116 |
Q |
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| T |
11353934 |
attataaaggtgtcccatgacctcttgtctgccagaaatcgagctcacatggaggctgtttgggagaaagctggatgcaatacagaagttgatctggcaa |
11354033 |
T |
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| Q |
117 |
taagttttgtgcaatgtgcacactgcagttacatgtttgttcagtttgctgaaaaataactgtcaaggcaaaaagaggtgatgttgatggttt |
209 |
Q |
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| T |
11354034 |
tgagtgttgt----tgtagacactgtagttgcatgtctgttcagcttgctgaaaaagaactgtcaagggaaaaagaagtgacgttgatggttt |
11354122 |
T |
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