View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18442_high_4 (Length: 404)

Name: NF18442_high_4
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18442_high_4
NF18442_high_4
[»] chr4 (2 HSPs)
chr4 (1-404)||(29314726-29315129)
chr4 (1-404)||(29308662-29309065)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 29315129 - 29314726
Alignment:
Q  1 caatggttttaaacttatcagtctggctacgaatggcctgtgtaaacttcacttgtgacttgacatcatctggaagctctgagaactcaatcttattcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315129 caatggttttaaacttatcagtctggctacgaatggcctgtgtaaacttcacttgtgacttgacatcatctggaagctctgagaactcaatcttattcga 29315030  T
Q  101 cttggaaacgcctttctcgccaacaggctgcatcccctcatcatgtaaagctattcgaagtccctcaacggcaaatcggaaagtatgaacctcagaaaca 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315029 cttggaaatgcctttctcgccaacaggctgcatcccctcatcatgtaaagctattcgaagtccctcaacggcaaatcggaaagtatgaacctcagaaaca 29314930  T
Q  201 gtcttagcatcaagaacctcccctctattcacatccatcaacatcttctgcaaatgtgctaacgcattccccatcgacggtaaatacgaaaatatttcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29314929 gtcttagcatcaagaacctcccctctattcacatccatcaacatcttctgcgaatgtgctaacgcattccccatcgacggtaaatacgaaaatatttcat 29314830  T
Q  301 gcatttgctaaagaaaaggatatatagactgtgaaaaggcaggggcgtcataactagttgttggctgattttcaaccgaccccgcctccgaaacagactc 400  Q
    ||| ||||| ||| ||||||||||||||||||| ||| ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  29314829 gcaattgctcaagcaaaggatatatagactgtgcaaatgcaggagcatcataactagttgttggctgaatttcaaccgaacccgcctccgaaacagactc 29314730  T
Q  401 attt 404  Q
    ||||    
T  29314729 attt 29314726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 29309065 - 29308662
Alignment:
Q  1 caatggttttaaacttatcagtctggctacgaatggcctgtgtaaacttcacttgtgacttgacatcatctggaagctctgagaactcaatcttattcga 100  Q
    |||| |||||||| ||||||||||| |||||||| ||||| | ||||  |||||| |||||| ||||  | ||||||||||||||||||| |||| | |     
T  29309065 caatagttttaaatttatcagtctgactacgaatagcctgagcaaacagcacttgcgacttgtcatccaccggaagctctgagaactcaaccttacttgc 29308966  T
Q  101 cttggaaacgcctttctcgccaacaggctgcatcccctcatcatgtaaagctattcgaagtccctcaacggcaaatcggaaagtatgaacctcagaaaca 200  Q
    ||||||||| ||||| ||  |||  | | ||||||||  || || ||||||||||| ||| |||||||| |||| ||  ||||||| |||||||||||||    
T  29308965 cttggaaacccctttgtcaacaatcgaccgcatccccctattatttaaagctattctaagcccctcaactgcaattctaaaagtataaacctcagaaaca 29308866  T
Q  201 gtcttagcatcaagaacctcccctctattcacatccatcaacatcttctgcaaatgtgctaacgcattccccatcgacggtaaatacgaaaatatttcat 300  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||||||| | |||  | ||||| |||||||||||||||||||  ||||| || ||||    
T  29308865 gtcttagcgtcaagaacctctcctctattcacatccaacaacatcttctgtacatgacccaacgccttccccatcgacggtaaatcagaaaacatatcat 29308766  T
Q  301 gcatttgctaaagaaaaggatatatagactgtgaaaaggcaggggcgtcataactagttgttggctgattttcaaccgaccccgcctccgaaacagactc 400  Q
    |||  | || ||| || ||||| || |||| || ||| ||||| |  || ||||||||| | || ||| |||||||||| ||| ||||||||||||||||    
T  29308765 gcaaatcctcaagcaatggataaatcgactttgcaaatgcaggtgtatcgtaactagttttcggttgaatttcaaccgaacccacctccgaaacagactc 29308666  T
Q  401 attt 404  Q
    ||||    
T  29308665 attt 29308662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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