View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_high_6 (Length: 340)
Name: NF18442_high_6
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 9220036 - 9219721
Alignment:
| Q |
9 |
acatcatcatcacttccgtaactactttcaattttcagtttcattcgaacacacattccgcaacatctccttcattccactctctccaaacattattttc |
108 |
Q |
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| T |
9220036 |
acatcatcatcacttccgtaactgctttcaattttcagttccattcgaacacacattccacagcctctccttcattccactctctccaaatattattttc |
9219937 |
T |
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| Q |
109 |
acagtttcctgcaaaatcctcaatgtcagctctctaacccttttcttccttcaattcaacaaaccataaaaccaagatctcaatttccggtaattttttc |
208 |
Q |
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| T |
9219936 |
acagtttcctgcaaaattctcaatgtcagctctctaacccttttcttccttcaattcaacaaaccataaaaccaagatctcaatttccggtaattttttc |
9219837 |
T |
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| Q |
209 |
ttcaattctgaattctcaatatacctaaatttcatcgattgaatttcacaattctgatatcacgtttctgattcagttattgcttcttcattagagggtt |
308 |
Q |
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| T |
9219836 |
ttcaattctgaattctcaatatacctaaatttcatcgattgaatttcacaattctgatatcacgtttttgattcagttattgcttcttcatcagagggtt |
9219737 |
T |
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| Q |
309 |
ttctgattcacatttt |
324 |
Q |
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| T |
9219736 |
ttctgattcacgtttt |
9219721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 3848236 - 3848101
Alignment:
| Q |
78 |
cttcattccactctctccaaacattattttcacagtttcctgcaaaatcctcaatgtcagctctctaacccttttcttccttcaattcaacaaaccataa |
177 |
Q |
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|||| |||||||||||||||| ||| | || ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||| ||| |
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| T |
3848236 |
cttctttccactctctccaaatattctctttacagtttcctgcaaaattctcaat-----ctctctaacccctaccttccttcaattcatcaaaccctaa |
3848142 |
T |
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| Q |
178 |
aaccaagatctcaatttcc-ggtaattttttcttcaattct |
217 |
Q |
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| T |
3848141 |
aaccattatctcaaattcctggtaattttttcttcaattct |
3848101 |
T |
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