View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_high_8 (Length: 246)
Name: NF18442_high_8
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34946966 - 34947195
Alignment:
| Q |
1 |
tcactttccatagcatcattaaaagtcttcaagtatgaagaattttgatgaataaaatcccaataactttcagggcctaatgcagtctcaacaattgtga |
100 |
Q |
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| T |
34946966 |
tcactttccatagcatcattaaaagtcttcaagtatgaagaattttgatgaataaaatcccaataactttcagggcctaatgcagtctcaacaattgtga |
34947065 |
T |
|
| Q |
101 |
gatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtggactgttcagcaaccgaaccattgaagataaacaatgatcagtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947066 |
gatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtggaatgttcagcaaccgaaccattgaagataaacaatgatcagtggt |
34947165 |
T |
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| Q |
201 |
agagacaaggagttgtgatgttggagtaag |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34947166 |
agagacaaggagttgtgatgttggagtaag |
34947195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34951437 - 34951666
Alignment:
| Q |
1 |
tcactttccatagcatcattaaaagtcttcaagtatgaagaattttgatgaataaaatcccaataactttcagggcctaatgcagtctcaacaattgtga |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
34951437 |
tcactttccatagcatcattaaaactcttcaagtatgcagaattttcatgaataaaatcccaataactttctgggcctaatgcggtctcaacaattgtga |
34951536 |
T |
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| Q |
101 |
gatcctctccacaagtccatttccctaaatgattgtacgagccaacaataggtggactgttcagcaaccgaaccattgaagataaacaatgatcagtggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951537 |
gatcctctccacaagtccatttccctaaatgattgtacgcgtcaacaagagttggagtgttcagcaaccgaaccattgaagataaacaatgatcagtgtc |
34951636 |
T |
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| Q |
201 |
agagacaaggagttgtgatgttggagtaag |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
34951637 |
agagacaaggagttgtgatgttggtgtaag |
34951666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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