View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_low_1 (Length: 590)
Name: NF18442_low_1
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 32377185 - 32376612
Alignment:
| Q |
1 |
aggttcaagttagagacaaaccctttgagaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggagg |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377185 |
aggttcaagttagagacaaacccttcgagaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggagg |
32377086 |
T |
|
| Q |
101 |
aatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
32377085 |
aatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaac |
32376986 |
T |
|
| Q |
201 |
atgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376985 |
atgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaag |
32376886 |
T |
|
| Q |
301 |
cactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32376885 |
cactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctatga |
32376786 |
T |
|
| Q |
401 |
attctgttttggaaaaccatcactttctgattgcacactttggttatgctgttgttggtgctctcttgctcaagaagctagaactgggaacagttatgat |
500 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
32376785 |
attctgttttggaaaaccatcattttctgattgcacactttggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgat |
32376686 |
T |
|
| Q |
501 |
ctcttggaagataagttatccatgaaagaaattgattcccgcgatcaatcttcggctacggaagacgtagtatc |
574 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32376685 |
atcttggaagataagttatccatgaaagaaattgattcccgcgatcaatcttcggctacggaagacgtagtatc |
32376612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 32365500 - 32364946
Alignment:
| Q |
1 |
aggttcaagttagagacaaaccctttgagaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggagg |
100 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32365500 |
aggttcaagttagagagaaaccattcgagaaaaaatatgcatttgcatctaaagatcaacaaggaggtattatagaaaatagaccgaaatggagtggagg |
32365401 |
T |
|
| Q |
101 |
aatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
32365400 |
aatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaac |
32365301 |
T |
|
| Q |
201 |
atgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaag |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365300 |
atgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaaa |
32365201 |
T |
|
| Q |
301 |
cactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365200 |
cactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataa |
32365101 |
T |
|
| Q |
401 |
attctgttttggaaaaccatcactttctgattgcacactttggttatgctgttgttggtgctctcttgctcaagaagctagaactgggaacagttatgat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
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|
| T |
32365100 |
attctgttttggaaaaccatcactttctgattgcacactttggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgat |
32365001 |
T |
|
| Q |
501 |
ctcttggaagataagttatccatgaaagaaattgattcccgcgatcaatcttcgg |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
32365000 |
atcttggaagataagttatccatgaaagaaattgatactcgcgatcaatcttcgg |
32364946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 75 - 476
Target Start/End: Complemental strand, 36122044 - 36121643
Alignment:
| Q |
75 |
gaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgtgtttggatgga |
174 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||| | ||| | || | ||||| | ||||||||||| ||||||||| ||||| |||| |
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| T |
36122044 |
gaaaatagaccaaagtggagtggtggaatacttgacatttgggacgatatctctcaagcatatttatcacttttctgtactttttgtgcatttggttgga |
36121945 |
T |
|
| Q |
175 |
acatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttag |
274 |
Q |
| |
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| |||||||||||||| ||||| |||||||||||||| || || || |||||||| || |||||||| ||||||||||| || | |||||| |||||| |
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| T |
36121944 |
atatggagagacttggctttggaaacatgtatgttcacattgccacttttatgcttttctgtatggcccccttttggattttcatcttggctgctgttaa |
36121845 |
T |
|
| Q |
275 |
aattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgaga |
374 |
Q |
| |
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||||| ||||||| |||||| ||| ||||||| | ||| || |||| |||||| ||| | || |||||||| ||||||||||| ||||||||| |
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|
| T |
36121844 |
tattgaggatgacactgttaggcaatgtctagtaggtgctgggattgttctatgttttttcggtatgctctatggtggtttttggaggatccaaatgaga |
36121745 |
T |
|
| Q |
375 |
aagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacactttggttatgctgttgttggtgctctcttgctcaag |
474 |
Q |
| |
|
||||||| ||||||||| | ||| | |||||||| || || || | |||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
36121744 |
aagaggtataatttgcctacttatgacttctgtttcggcaagcctgcggtttcggattgcatactttggctattctgttgttggtgctctcttgctcaag |
36121645 |
T |
|
| Q |
475 |
aa |
476 |
Q |
| |
|
|| |
|
|
| T |
36121644 |
aa |
36121643 |
T |
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