View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_low_10 (Length: 232)
Name: NF18442_low_10
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 27212426 - 27212225
Alignment:
| Q |
20 |
taaataaatacatttattatgtaaattgtactgccagatttctgagaagtcacttggttgaatgataaatacatcaaccttgagaaactcagttcgagac |
119 |
Q |
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| T |
27212426 |
taaataaatacatttattatgtaaattgtaccgccagattcctgagaagtcacttggttgaatgataaatacttcaactttgagaaactcagttcgagac |
27212327 |
T |
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| Q |
120 |
ttggcactgtaataaaactttgattaaaaatgtgacaaaatatgaggtatttcaaaatacctttctttttatcatttttattcaatcttattggtaattc |
219 |
Q |
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|||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
27212326 |
ttggcagtgtgataaaactttgattaaaattgtgacaaaatatgaggtatttcaaaatacctttctttttatcatttttattcaatcttttcggtaattc |
27212227 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
27212226 |
at |
27212225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 27235900 - 27235720
Alignment:
| Q |
20 |
taaataaatacatttattatgtaaattgtactgccagatttctgagaagtcacttggttgaatgataaatacatcaaccttgagaaactcagttcgagac |
119 |
Q |
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| T |
27235900 |
taaataaatacatttttgatgtaaattgtaccgtcagattcctgagaggtcacttggttgaaagataaatacttcaacctcgtgaaactcagttcgagac |
27235801 |
T |
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| Q |
120 |
ttggcactgt-aataaaactttgattaaaaatgtgacaaaatatgaggtatttcaaaatacctttctttttatcatttttatt |
201 |
Q |
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| T |
27235800 |
tcggcattatgatttcgaagtagattaaatatgtgaaaaaatatgaggtatt--aaaatacctctctttttatcatttttatt |
27235720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 12071491 - 12071709
Alignment:
| Q |
2 |
aaacatgcatgtactagttaaataaatacatttattatgtaaattgtactgccagatttctgagaagtcacttggttgaatgataaatacatcaaccttg |
101 |
Q |
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||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| | ||||||| |
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| T |
12071491 |
aaacatggatgtgctagttaaataaatacattttttatgtaaattgtactgccagattcctgagaggtcacttggttgaaagataaatactttaaccttg |
12071590 |
T |
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| Q |
102 |
agaaactcagttcgagacttggca-------ctgtaataaaactttgattaaaaatgtgacaaaatatgaggtatttcaaaatacctttctttttatcat |
194 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
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| T |
12071591 |
agaaactcagttcgagacttggcatcgtgatatgtgataaaactttgattaaaaatgcaaaaaaatatgaggtatttcaaaatacctctctttttatcac |
12071690 |
T |
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| Q |
195 |
ttttattcaatcttattgg |
213 |
Q |
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|||||||||||||| |||| |
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| T |
12071691 |
ttttattcaatctttttgg |
12071709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 13094097 - 13094193
Alignment:
| Q |
54 |
cagatttctgagaagtcacttggttgaatgataaatacatcaaccttgagaaactcagttcgagacttggcactgtaataaaactttgattaaaaat |
150 |
Q |
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|||||| |||||| |||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
13094097 |
cagattcctgagaggtcatttggttgaaagataaatattttaaccttgagaaactcagttcgagacttggcagtgtgataaaactttgattaaaaat |
13094193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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