View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_low_3 (Length: 509)
Name: NF18442_low_3
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 7999408 - 7999912
Alignment:
| Q |
7 |
gaaaagcaattttctagtattcagtcatattattagcccatgcaaaactatcgtgcttccgaagaagaaccctaacactcccattccctcgattcgattc |
106 |
Q |
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| T |
7999408 |
gaaaagtaattttctagtattccgtcatattattagcccatgcaaaactatcgtgcttccgaagaagaaccctaacattcccattccctcgattcgattc |
7999507 |
T |
|
| Q |
107 |
tcgacccaactccaatcctttctggattcagtgagctcttcaattttgtattctctctcaa----------ttcaattcattttctgattgtaatttggg |
196 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7999508 |
tcgacccaactccaatcctttctggattcagcgagcacttcaattttgtattctctctcaattcaattcaattcaattcattttctgattgtaatttggg |
7999607 |
T |
|
| Q |
197 |
atttaggttttgtttgctgcaacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7999608 |
atttaggttttgtttgctgcaacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgtcgtcaagagtg |
7999707 |
T |
|
| Q |
297 |
caagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgc |
396 |
Q |
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| T |
7999708 |
caagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgc |
7999807 |
T |
|
| Q |
397 |
ggtatttgtgttaaggtattattattctattcattaacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtga |
496 |
Q |
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| T |
7999808 |
ggtatttgtgttaaggtattattattctattcattcacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtga |
7999907 |
T |
|
| Q |
497 |
tgatg |
501 |
Q |
| |
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||||| |
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| T |
7999908 |
tgatg |
7999912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 122 - 441
Target Start/End: Complemental strand, 7909048 - 7908721
Alignment:
| Q |
122 |
tcctttctggattcagtgagctcttcaattttgtattctctctcaattcaattc-----attttctgattgtaatttgggatttaggttttgtttgctgc |
216 |
Q |
| |
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|||||||| ||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
7909048 |
tcctttctcgattcggtaagctcttcaattttgtatttactctcaattcaattcgattcattttctgattgtaatttgggatttaggttttatttgctgc |
7908949 |
T |
|
| Q |
217 |
aacatgtctgatgaacgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcg |
316 |
Q |
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| T |
7908948 |
aacatgtctgatgaacgatcgatgcgtactgccttcgttaacaacgacaaatgcagaccgctaaagtgtcatcaagagtgccagatgatttgtcctgtcg |
7908849 |
T |
|
| Q |
317 |
tcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
416 |
Q |
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| T |
7908848 |
tcataattggaaaatcatgtgttgaggttactcctgagtccaagattgcttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtatt |
7908749 |
T |
|
| Q |
417 |
a-ttattc--tattcattaactttttta |
441 |
Q |
| |
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| T |
7908748 |
atttattcattattcattcactttttta |
7908721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 51514623 - 51514717
Alignment:
| Q |
232 |
cgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccgg |
326 |
Q |
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| T |
51514623 |
cgattgacacgtattgccatcgttagcaacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccgg |
51514717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 51514830 - 51514924
Alignment:
| Q |
325 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
419 |
Q |
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| T |
51514830 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
51514924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 51514550 - 51514590
Alignment:
| Q |
167 |
attcaattcattttctgattgtaatttgggatttaggtttt |
207 |
Q |
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| T |
51514550 |
attccattcagtttctgattgtaatttgggatttaggtttt |
51514590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 1304674 - 1304583
Alignment:
| Q |
325 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
416 |
Q |
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| T |
1304674 |
ggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 1304866 - 1304784
Alignment:
| Q |
236 |
tgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtc |
318 |
Q |
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| T |
1304866 |
tgacgcgtattgccattgtcaatgaagacagatgcaagccgaaaaagtgtcgacaggagtgtaagaagagttgccctgtcgtc |
1304784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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