View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18442_low_5 (Length: 386)
Name: NF18442_low_5
Description: NF18442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18442_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 50301686 - 50301315
Alignment:
| Q |
1 |
aattaagcgttaattctctatctcttgcaagagcattcatttcctaagctggtccccgatacttctatgatcatcctgtatcgattgagcgattttttat |
100 |
Q |
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| T |
50301686 |
aattaagcgttaattctctatctcttgcaagagcattcatttcctaagctggtccccgttacttctatgatcatcctgtatcgattgagcgattttttat |
50301587 |
T |
|
| Q |
101 |
taatgaaatgatgatggactacaatatctttttattagcaccgttgcttaatgattaaaacaccacattcggattctctaagtccatttttattgacaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50301586 |
taatgaaatgatgatgaactacaatatctttttattagcaccgttgcttaatgattaaaacaccacattcggattctctaagtccatttttattgacaaa |
50301487 |
T |
|
| Q |
201 |
gaaaggaatgtatcgcatggnnnnnnnnnnnnnnnnnnnnnnnnnttggttgttttagtcaataaatgattttgatttatataacttatgnnnnnnngag |
300 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50301486 |
gaaaggaatgtatcacatggtttattttttatttacatttttttattggttgctttagtcaataaatgattttgatttatataacttatg-ttttttgag |
50301388 |
T |
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| Q |
301 |
gaaatatgac---ttattaagtaagaaaaatgatcacaatctttcatcaaataaattttatatactgattttt |
370 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50301387 |
gaaatatgacttattattaagtaagaaaaatgatcacaatctttcatcaaataaattttatatactgattttt |
50301315 |
T |
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