View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_high_11 (Length: 276)
Name: NF18443_high_11
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 47946837 - 47947103
Alignment:
| Q |
1 |
tgttgcactatgttgtaagttacccactatcgctgctggccaataacctacaatgattttatccttcattctaagccaccagttcccattacgatcctaa |
100 |
Q |
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| T |
47946837 |
tgttgcactatgttgtaagttacccactatcgctgctggccaataacctacaatgattttatccttcattctaagccaccagttcccattacgatcctaa |
47946936 |
T |
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| Q |
101 |
atcaagccaacaatttaagaggaattagtaaattaattaatagttcttttatacactacaaaaacacatgttattaattattacccaaaatattccaacg |
200 |
Q |
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| T |
47946937 |
atcaagccaacaatttaagaggaattagtaaattaattaatagttcttttatacactacaaaaacacatgttattaattattacccaaaatattccaacg |
47947036 |
T |
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| Q |
201 |
ttgatttcatattgttggttaaactgagatgaataaggtcctacggtagaaccaagtgctatctctg |
267 |
Q |
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| T |
47947037 |
ttgatttcatattgttggttaaactgagatgaataaggtcctacggtagaaccaagtgctatctctg |
47947103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 47935729 - 47935807
Alignment:
| Q |
35 |
gctggccaataacctacaatgattttatccttcattctaagccaccagttcccattacgatcctaaatcaagccaacaa |
113 |
Q |
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| T |
47935729 |
gctggccaataacctaccatgatggtatccttcactctaagccaccagtttccatcctcatcctaaatcaagcaaacaa |
47935807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 47919317 - 47919356
Alignment:
| Q |
180 |
attacccaaaatattccaacgttgatttcatattgttggt |
219 |
Q |
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| T |
47919317 |
attacccgaaatattccaacgttgatttcatattgttggt |
47919356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 47928430 - 47928472
Alignment:
| Q |
175 |
taattattacccaaaatattccaacgttgatttcatattgttg |
217 |
Q |
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| T |
47928430 |
taattattacctgaaatattccaacattgatttcatattgttg |
47928472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 47909519 - 47909559
Alignment:
| Q |
177 |
attattacccaaaatattccaacgttgatttcatattgttg |
217 |
Q |
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| T |
47909519 |
attattacctgaaatattccaacgtttatttcatattgttg |
47909559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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