View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18443_high_16 (Length: 239)

Name: NF18443_high_16
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18443_high_16
NF18443_high_16
[»] chr5 (1 HSPs)
chr5 (1-237)||(31192432-31192667)
[»] scaffold0340 (1 HSPs)
scaffold0340 (11-101)||(16675-16764)
[»] chr4 (3 HSPs)
chr4 (42-182)||(20314372-20314510)
chr4 (15-65)||(17380764-17380814)
chr4 (15-87)||(19084149-19084220)
[»] chr8 (1 HSPs)
chr8 (10-63)||(12656527-12656580)
[»] chr2 (2 HSPs)
chr2 (15-64)||(23738108-23738157)
chr2 (15-63)||(9789136-9789184)
[»] chr6 (1 HSPs)
chr6 (15-63)||(8323174-8323222)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31192667 - 31192432
Alignment:
Q  1 ttcgacggtatctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaagg 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |    
T  31192667 ttcgagggtatctaaagacattacagagtggagaaattatattccaagtcccatgataagtttcaa-tgaagaaagcactctaaaagaccaagaaaaaag 31192569  T
Q  101 cnnnnnnngattttggaagaaggtgccgtgcaacccaagcatgatcttgtgcaccctggatgtgcaaaacaatgcacaaaatgtactgtttttgacttga 200  Q
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  31192568 gcaaaaaagattttggaagaaggtgccgtgcaacccaagcatgatcttgtccaccctggatgtgcaaaacagtgcacaaaatgtactgtttttgatttga 31192469  T
Q  201 tgtgtggcgctcatgatgctacgcgcaacgtgtgttc 237  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  31192468 tgtgtggcgctcatgatgccacgcgcaatgtgtgttc 31192432  T

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Target: scaffold0340 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 16764 - 16675
Alignment:
Q  11 tctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggc 101  Q
    ||||||||||||||| || | |||||||||||||  ||||||| |||||||||| |||||||||| ||||| ||||||| |||||||||||    
T  16764 tctaaagacattacaaagagaagaaattatattctgagtcccaagacaagtttc-aatgaagaaaacactcaaaaagatgaagaaaaaggc 16675  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 20314372 - 20314510
Alignment:
Q  42 ttccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagca 141  Q
    |||||||||||| ||||| ||||||| |||||||| |||| |||||| ||||||||| ||       | | ||||||||||||||| ||||  || ||||    
T  20314372 ttccaagtcccaagacaaatttcaaa-gaagaaagtactcaaaaagaccaagaaaaaagcaaaaaatg-tgttggaagaaggtgccatgcactccgagca 20314469  T
Q  142 tgatcttgtgcaccctggatgtgcaaaacaatgcacaaaat 182  Q
    |||   ||||| |||||| ||||||||||||||||||||||    
T  20314470 tgactctgtgcgccctggttgtgcaaaacaatgcacaaaat 20314510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 17380814 - 17380764
Alignment:
Q  15 aagacattacagagtggagaaattatattccaagtcccatgacaagtttca 65  Q
    ||||||||||| || ||||||||| |||| ||||||||| |||||||||||    
T  17380814 aagacattacaaagaggagaaattctatttcaagtcccaagacaagtttca 17380764  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 19084149 - 19084220
Alignment:
Q  15 aagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaag 87  Q
    ||||||||||| ||||||||| |  |||||||||| ||| |||||||||| || |||||||||| || |||||    
T  19084149 aagacattacaaagtggagaactactattccaagtgccaagacaagtttc-aaggaagaaagcattcaaaaag 19084220  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 12656527 - 12656580
Alignment:
Q  10 atctaaagacattacagagtggagaaattatattccaagtcccatgacaagttt 63  Q
    |||| ||||||||||| | |||||||||||||||||||| | || |||||||||    
T  12656527 atctgaagacattacaaaatggagaaattatattccaagccacaagacaagttt 12656580  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 23738157 - 23738108
Alignment:
Q  15 aagacattacagagtggagaaattatattccaagtcccatgacaagtttc 64  Q
    |||| |||||| |||||||||||| |||||| ||||||| ||||||||||    
T  23738157 aagatattacaaagtggagaaattctattccgagtcccaagacaagtttc 23738108  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 9789136 - 9789184
Alignment:
Q  15 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 63  Q
    |||||||||||   |||||||||| |||||||||||||| |||||||||    
T  9789136 aagacattacaagttggagaaattctattccaagtcccaagacaagttt 9789184  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 8323174 - 8323222
Alignment:
Q  15 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 63  Q
    ||||||||| | |||||||||||| |||| ||||||||| |||||||||    
T  8323174 aagacattagaaagtggagaaattctatttcaagtcccaagacaagttt 8323222  T

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