View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18443_high_3 (Length: 582)
Name: NF18443_high_3
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 16963562 - 16962989
Alignment:
| Q |
1 |
acaaattaggacctgcatttcctccatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaa |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963562 |
acaaattaggacctggatttccttcatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaa |
16963463 |
T |
|
| Q |
101 |
tatgtcttgtggttcttctctaacatttgttgatatctcaaacaattctctggaaggaaaattgccatcatgcatcgattcgacgttgtcggttaatcga |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | |||||| |
|
|
| T |
16963462 |
tatatcttgtggttcttctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattgattcgacattgtcgttgaatcga |
16963363 |
T |
|
| Q |
201 |
acaatagtttattctggtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccgctaagccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16963362 |
acaatagtttattctggtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacattgcaagaattcaacggtgttagccgctaagccga |
16963263 |
T |
|
| Q |
301 |
gatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16963262 |
gatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttggaattgtagggcttttgattctactctttct |
16963163 |
T |
|
| Q |
401 |
gttcattttgagaaagtctaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattaca |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963162 |
gttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattaca |
16963063 |
T |
|
| Q |
501 |
tacatataaacatttcata--ctagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
572 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963062 |
tacacataaacatttcatattgtagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
16962989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 16216307 - 16215792
Alignment:
| Q |
1 |
acaaattaggacctgcatttcctccatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaa |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16216307 |
acaaattaggacctggatttccttcatttttgatctctcttcctttgatacagaacctaaacctggcttcaaatcaatttaatggttcattttctatgaa |
16216208 |
T |
|
| Q |
101 |
tatgtcttgtggttcttctctaacatttgttgatatctcaaacaattctctggaaggaaaattgccatcatgcatc----gattcgacgttgtcggttaa |
196 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16216207 |
tatatcttgtggttcttctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattaattgattcgacgttgtcggttaa |
16216108 |
T |
|
| Q |
197 |
tcgaacaatagtttattctggtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccgctaag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
|
|
| T |
16216107 |
tcgaacaatagtttattctggtaattgtttgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaagaattcaacagtgttagccgctgag |
16216008 |
T |
|
| Q |
297 |
ccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactct |
396 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16216007 |
acgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactct |
16215908 |
T |
|
| Q |
397 |
ttctgttcattttgagaaagtctaaagcagaaagagaag---------------atagatctgttgatatttcaagagaatcaagactaaatatttatgc |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16215907 |
ttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaagagaatcaagaccaaatatttatgc |
16215808 |
T |
|
| Q |
482 |
aagtaaggccataatt |
497 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
16215807 |
aagtaaggccacaatt |
16215792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 418
Target Start/End: Complemental strand, 48892257 - 48892031
Alignment:
| Q |
195 |
aatcgaacaatagtttattctggtaattgtt---tatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccg |
291 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| | ||| | |||| | |||||||||||||| |||||||| | |||||||| | |||| ||| || |
|
|
| T |
48892257 |
aatcgaaaaatagtttattctggcaattgttgtttgtcaactagaagtttcagtgatcaacatccatcttcatattgcaagaaattgacggccttatcca |
48892158 |
T |
|
| Q |
292 |
ctaagccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattct |
391 |
Q |
| |
|
|||| |||||||||||| | | |||||| | ||| |||||| || || ||| || ||||||||||||||| | ||||| ||||||||||||| | |
|
|
| T |
48892157 |
ctaatccgagatttgagggtaagtaggaatcaaaggagcaactaggactaatacttgatactattggaggttttgtaggaattgcagggcttttgattat |
48892058 |
T |
|
| Q |
392 |
actctttctgttcattttgagaaagtc |
418 |
Q |
| |
|
| | ||||||||||||||||||||||| |
|
|
| T |
48892057 |
attttttctgttcattttgagaaagtc |
48892031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University