View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_high_9 (Length: 336)
Name: NF18443_high_9
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 3957308 - 3957007
Alignment:
| Q |
18 |
agtattacttctctatcactttcnnnnnnnaaatcaaacattttacattcatgcttaactaatccatttcagaattgagatgatggatgttatatatata |
117 |
Q |
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| T |
3957308 |
agtattacttctctatcacttt-tttttttaaatcaaacattttacattcatgcttaactagtccatttcagaattgagatgatggatgttatatatata |
3957210 |
T |
|
| Q |
118 |
gtaatggaatattctaaannnnnnngaaaattttgtaggttgaagcggataaacccagaatgtccacttactagtttgccatatattaagccaacagaca |
217 |
Q |
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| T |
3957209 |
gtaatggaatattctaaatttttttttaaattttgtaggttggagcgaataaacccagaatgtccacttactagtttgccatatattaagccaacagaca |
3957110 |
T |
|
| Q |
218 |
actgtcttgctaaggtcacaaagctctctgatgcttaattagttacaaccttgcttgtatggccctctaagagaccttcaatttcctagtttgatgcttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
3957109 |
actgtcttgctaaggtcacaaagctctctgatgcttaattagttacaaccttgcttgtatggccctctaagagatcttcaatttcctagtttgatgctat |
3957010 |
T |
|
| Q |
318 |
ctg |
320 |
Q |
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||| |
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| T |
3957009 |
ctg |
3957007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 124916 - 124805
Alignment:
| Q |
145 |
aaattttgtaggttgaagcggataaacccagaatgtccacttactagtttgccatatattaagccaacagacaactgtcttgctaaggtcacaaagctct |
244 |
Q |
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||||||||||||||| |||| ||||| || ||||||||| |||||||||| |||||| |||||||| |||||| |||||||||||||||| |||| ||| |
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| T |
124916 |
aaattttgtaggttggagcgaataaatcctgaatgtccaattactagtttcccatattctaagccaatagacaattgtcttgctaaggtcataaagatct |
124817 |
T |
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| Q |
245 |
ctgatgcttaat |
256 |
Q |
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| T |
124816 |
ctgattcttaat |
124805 |
T |
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