View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18443_low_1 (Length: 680)
Name: NF18443_low_1
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 16 - 671
Target Start/End: Complemental strand, 18220281 - 18219626
Alignment:
| Q |
16 |
taaatatcttgcccatcatctcctccaacaatgttattttatcatgcatatccgacaactttatatttagtgacttcatccgaggcccctcggatttttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18220281 |
taaatatcttgcccatcatctcctccaacaatgttattttatcgtgcatatccgacaactttatatttagtgacttcatccgaggcccctcggatttttt |
18220182 |
T |
|
| Q |
116 |
cttcttttgaccatccaattgtctacgagtaatgtctcgttgtacagcaagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18220181 |
cttcttttgaccatccaattgtctacgagtaatgtctcgttgtacagcaagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaat |
18220082 |
T |
|
| Q |
216 |
gaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggtccatgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18220081 |
gaagcaacttgacgataaactcgtggaggggtgcatgaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggtccatgct |
18219982 |
T |
|
| Q |
316 |
gacattcacgtaccaaattatccaagaatgattctagattctctttcaagtttttaaactcactctttatggaattttgataacattcaacttcaccacn |
415 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
18219981 |
gacattcacgtaccaaattatcccagaatgattctagattctctttcaagtttttaaactccttctttatggaattttgataacattcaacttcaccact |
18219882 |
T |
|
| Q |
416 |
nnnnnnngcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatacctcaaac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18219881 |
tttttttgcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatacctcaaac |
18219782 |
T |
|
| Q |
516 |
agcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgttacctttga |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18219781 |
agcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgttacctttga |
18219682 |
T |
|
| Q |
616 |
ttgtttcaaacaaagtctgatcagtaggtttaagcgtcgccctagcatttcctttg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
18219681 |
ttgtttcaaacaaagtctgatcagtaggtttaagcgtcgccccagcagttcctttg |
18219626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 671
Target Start/End: Original strand, 18145380 - 18146035
Alignment:
| Q |
16 |
taaatatcttgcccatcatctcctccaacaatgttattttatcatgcatatccgacaactttatatttagtgacttcatccgaggcccctcggatttttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
18145380 |
taaatatcttgcccatcatctcctccaacgatgttattttctcgtgcatatccgacaactttatatttagtgtctccatccgaggcccctcggttttttt |
18145479 |
T |
|
| Q |
116 |
cttcttttgaccatccaattgtctacgagtaatgtctcgttgtacagcaagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18145480 |
cttcttttgaccatccaattgtctacgagtaatgtctcgttgtacgccaagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaat |
18145579 |
T |
|
| Q |
216 |
gaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggtccatgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |
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|
| T |
18145580 |
gaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaaaaatggtccatgct |
18145679 |
T |
|
| Q |
316 |
gacattcacgtaccaaattatccaagaatgattctagattctctttcaagtttttaaactcactctttatggaattttgataacattcaacttcaccacn |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18145680 |
gacattcacgtaccaaattatccaagaatgattctagattctctttcaagcttttaaactcactctttatggaattttgataacattcaacttcaccact |
18145779 |
T |
|
| Q |
416 |
nnnnnnngcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatacctcaaac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18145780 |
tttttttgcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatacctcaaac |
18145879 |
T |
|
| Q |
516 |
agcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgttacctttga |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18145880 |
agcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagtttgccgttacctttga |
18145979 |
T |
|
| Q |
616 |
ttgtttcaaacaaagtctgatcagtaggtttaagcgtcgccctagcatttcctttg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
18145980 |
ttgtttcaaacaaagtctgatcagtaggtttaagagtagccctagcagttcctttg |
18146035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 43842264 - 43842497
Alignment:
| Q |
16 |
taaatatcttgcccatcatctcctccaacaatgttattttatcatgcatatccgacaactttatatttagtgacttcatccgaggcccctcggatttttt |
115 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||| || ||||||||||| ||| || |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
43842264 |
taaatatcttgcgcatcatctcttccaacagtgttattttctcgtgcatatccgaaaaccttttatttagtgactccatccgaggcccctcggttttttt |
43842363 |
T |
|
| Q |
116 |
cttcttttgaccatccaattgtctacgagtaatgtctcgttgtacagcaagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaat |
215 |
Q |
| |
|
|||||||| | |||||||||||||||||||| | |||| |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43842364 |
cttcttttcagcatccaattgtctacgagtagtctctctttgtacgccaagcatattagcaacagttatatatgatgtgaccaatgaaagacccatcaat |
43842463 |
T |
|
| Q |
216 |
gaagcaacttgacgataaactcgtggaggggtgc |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
43842464 |
gaagcaacttgacgataaactcttggaggggtgc |
43842497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 252 - 412
Target Start/End: Original strand, 43842591 - 43842751
Alignment:
| Q |
252 |
gaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggtccatgttgacattcacgtaccaaattatccaagaatgattcta |
351 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
43842591 |
gaaagtgcaatgatgtagtccatgcacttgtcaaataaaacctggtcaaacaatggtccatgctgacattcacggaccaaattatcccagaatgactcta |
43842690 |
T |
|
| Q |
352 |
gattctctttcaagtttttaaactcactctttatggaattttgataacattcaacttcacc |
412 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
43842691 |
gattctctttgaagtttttaaactccttctttttggaattttgataatcttcaacttcacc |
43842751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 506 - 616
Target Start/End: Original strand, 43843673 - 43843783
Alignment:
| Q |
506 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccg |
605 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
43843673 |
tacctcaaacagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccg |
43843772 |
T |
|
| Q |
606 |
ttacctttgat |
616 |
Q |
| |
|
||||||||||| |
|
|
| T |
43843773 |
ttacctttgat |
43843783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 43843398 - 43843477
Alignment:
| Q |
427 |
agttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacat |
506 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43843398 |
agttgacaagagcaacaacaacatcatcaacgtcaatctcatgcatgagatcccttttgtcgtgaaatttggctccacat |
43843477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 35136712 - 35136645
Alignment:
| Q |
163 |
caagcatattagcaatagttatatatgatgtgatcaatgaaagacccatcaatgaagcaacttgacga |
230 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
35136712 |
caagcatattagcgatagttatatatgacgtgaccaatgaaagtcccatgaatgaagcaacttgacga |
35136645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 35129592 - 35129553
Alignment:
| Q |
16 |
taaatatcttgcccatcatctcctccaacaatgttatttt |
55 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
35129592 |
taaatatcttgctcatcatctcctccaacagtgttatttt |
35129553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 616
Target Start/End: Complemental strand, 19862897 - 19862787
Alignment:
| Q |
506 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccg |
605 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| |||||| || |||| ||||| |||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
19862897 |
tacctcaaccagcgttgtcaagagttcatccatcgcagatctttgatccttttcgtagctttcaacccaaagtttgacagcatgaggaataagtttgcca |
19862798 |
T |
|
| Q |
606 |
ttacctttgat |
616 |
Q |
| |
|
||| ||||||| |
|
|
| T |
19862797 |
ttatctttgat |
19862787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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