View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_15 (Length: 253)
Name: NF18443_low_15
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 47946777 - 47946549
Alignment:
| Q |
9 |
aggagcacagatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaag |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47946777 |
aggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaag |
47946678 |
T |
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| Q |
109 |
tatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggaggac |
208 |
Q |
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| T |
47946677 |
tatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggaggac |
47946578 |
T |
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| Q |
209 |
ctgggcgaagacctccatattgtccttga |
237 |
Q |
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| T |
47946577 |
ctgggcgaagacctccatattgtccttga |
47946549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 47928201 - 47927998
Alignment:
| Q |
9 |
aggagcacagatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaag |
108 |
Q |
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| T |
47928201 |
aggaacacagatgggtagtggagatgcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaag |
47928102 |
T |
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| Q |
109 |
tatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggaggac |
208 |
Q |
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| T |
47928101 |
tatccatcatttgtaagtacacatgctgcagaaccatattgttacagtgccctcaatgacgctccatatggaaaagatcctgtattctactttggaggag |
47928002 |
T |
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| Q |
209 |
ctgg |
212 |
Q |
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|||| |
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| T |
47928001 |
ctgg |
47927998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 47935635 - 47935438
Alignment:
| Q |
9 |
aggagcacagatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaag |
108 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| || ||||||| |
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| T |
47935635 |
aggaacacagatgggtagtggagaagaagcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaa |
47935536 |
T |
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| Q |
109 |
tatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggagg |
206 |
Q |
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| T |
47935535 |
tatccagcatatgtaactacttatgctgcagaaccatattgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagg |
47935438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 47918331 - 47918211
Alignment:
| Q |
117 |
atttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggaggacctgggcga |
216 |
Q |
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||||||||||||| |||| |||||| || |||||||||||| |||| |||| || |||||||||||||||||| |||| ||||||||| |||| ||| |
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| T |
47918331 |
atttgtaagtacacatgctatagaaccatattgttacagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggaggtgctggacga |
47918232 |
T |
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| Q |
217 |
agacctccatattgtccttga |
237 |
Q |
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|| ||||| ||||||||||| |
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| T |
47918231 |
aggcctcctcattgtccttga |
47918211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 47909206 - 47909076
Alignment:
| Q |
76 |
gtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaat |
175 |
Q |
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||||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||| |||| | ||| ||| | |||||||||||||| || || || || |
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| T |
47909206 |
gtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccat |
47909107 |
T |
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| Q |
176 |
atggaaaagatcctgtcttcttttttggagg |
206 |
Q |
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|||||||||| ||||| ||||| |||||||| |
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| T |
47909106 |
atggaaaagaccctgtgttcttctttggagg |
47909076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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