View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_18 (Length: 230)
Name: NF18443_low_18
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 5503082 - 5502887
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5503082 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct |
5502983 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
212 |
Q |
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||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5502982 |
tcagagcttggtattttcatttgctattacatattttgtcctttcagttaga--tatagcataaatttacatatttcaccatttgtgttgatattatt |
5502887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 5446520 - 5446336
Alignment:
| Q |
28 |
agtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcagaacttggta |
127 |
Q |
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|
|||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446520 |
agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta |
5446421 |
T |
|
| Q |
128 |
ttttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446420 |
ttttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
5446336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 5490266 - 5490073
Alignment:
| Q |
18 |
agatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttca |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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| T |
5490266 |
agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca |
5490167 |
T |
|
| Q |
118 |
gaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5490166 |
gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgttgatattatt |
5490073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 5455092 - 5454895
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |
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|
| T |
5455092 |
cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct |
5454993 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |
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|
| T |
5454992 |
tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgtcttgatattatt |
5454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 5484875 - 5484688
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
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|
| T |
5484875 |
cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct |
5484776 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
202 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || |||||| |||||||||||| ||||||| ||||||| ||||||||| |
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|
| T |
5484775 |
tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgt |
5484688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 5525919 - 5525734
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
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|
| T |
5525919 |
cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct |
5525820 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
202 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||| | ||||||||||||||||||| | ||||| |||||||| ||||||||| |
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|
| T |
5525819 |
tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagc--acatttatatatttcatcatttgtgt |
5525734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 20343712 - 20343514
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
20343712 |
cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct |
20343613 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtccttt-cagttagatatatagcataaattt-acatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||| ||| |||||| | |||||||| ||||| | |||||| |||| |
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|
| T |
20343612 |
tcagaacttggtattttcatttcctattacatcttt-ttcctttccagttagatatattgcacaaatttcatatatttcagcatttatcttgatagtatt |
20343514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 5854188 - 5854348
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
5854188 |
cagatatgttggaagtggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct |
5854287 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagca |
175 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| | | ||||||| ||||||||||| |
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|
| T |
5854288 |
tcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagca |
5854348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 5828158 - 5828279
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| || |||||| |
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|
| T |
5828158 |
cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct |
5828257 |
T |
|
| Q |
115 |
tcagaacttggtattttcattt |
136 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
5828258 |
tccgaacttggtattttcattt |
5828279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 5848887 - 5849003
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| || |||||| |
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|
| T |
5848887 |
cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct |
5848986 |
T |
|
| Q |
115 |
tcagaacttggtatttt |
131 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
5848987 |
tcagaactcggtatttt |
5849003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
| Q |
19 |
gatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
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|
| T |
5802494 |
gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag |
5802593 |
T |
|
| Q |
119 |
aacttggtattttc |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5802594 |
aacttggtattttc |
5802607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 25809292 - 25809476
Alignment:
| Q |
28 |
agtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcagaacttggta |
127 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25809292 |
agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta |
25809391 |
T |
|
| Q |
128 |
ttttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25809392 |
ttttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattatt |
25809476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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