View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_2 (Length: 608)
Name: NF18443_low_2
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 4521658 - 4521435
Alignment:
| Q |
17 |
agttacgatttggtacacttttcaaattactatcaaaacgaaaccatgagaagaagaataagtgtttatcagatgtggatgaattccttcgttgcaagga |
116 |
Q |
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| T |
4521658 |
agttacgatttggtacacttttcaaattactatcaaaacgaaacagtgagaagaagaataagtgtttatcagatgtggaagaattcattcgttgcaagga |
4521559 |
T |
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| Q |
117 |
agctcctaagacaattatgcattgcttgagggattctgaaatgattaataatatcttggagaagtttataaatatggagacaaccattgagcaccttttt |
216 |
Q |
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| T |
4521558 |
agctcctaagacaattatgcattgcttgagggattctgaaatgattaataatatcttggagaagtttataaatatggagacaaccattgagcaccttttt |
4521459 |
T |
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| Q |
217 |
tagtattggtcttcttcaatattg |
240 |
Q |
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|||||||||| ||||||||||||| |
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| T |
4521458 |
tagtattggttttcttcaatattg |
4521435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 242 - 522
Target Start/End: Complemental strand, 4521204 - 4520929
Alignment:
| Q |
242 |
ttgaggttttacttataatcttggtcgagccacatcggttttagctgagattttagggtcatgcatggcttcccctaatggcaagcaggtccgatcctaa |
341 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
4521204 |
ttgatgttttacttataatcttggtcgggccacatcggttttagctgaggttttagggtgatgcgtggcttcgcctaatggcgagcaggtccgatcctaa |
4521105 |
T |
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| Q |
342 |
gacttgtggggtcttgggcggccgcccttcttgcccaggctcagaaccacacctcatcgcgagtactaatggcgtggactggagggtgaaggagttgatt |
441 |
Q |
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||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
4521104 |
gacttttggggtcttgggcagctgcccttcttgcccatgctcagaaccacacctcatcgcgggtactaatggc-----atggagggtgaaggagttgatt |
4521010 |
T |
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| Q |
442 |
cgtcatctcactcaattgttgcttattcttgatgtagatatttgagggacaagattttctcattaattcattagtttttct |
522 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
4521009 |
cgtcatctctctcaattgtagcttattcttgatgtagatattcgagggacaagattttctgattaattcattagtttttct |
4520929 |
T |
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