View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_4 (Length: 479)
Name: NF18443_low_4
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 4537273 - 4537729
Alignment:
| Q |
16 |
aaaagatgagattgtaaataagggactgtccttacttttggacgatcctcg-----taggaactgtataaaaatttattt-gcttatattaatcatgatt |
109 |
Q |
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| T |
4537273 |
aaaagatgagattgtaaataagggattgtccttacttttggacgacccttgatttgtaggaaccgtataaaaattgattttgcttatattaatcatgatt |
4537372 |
T |
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| Q |
110 |
ttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaataattctaattgtttgattattaagaaccaaaatttattataac |
209 |
Q |
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| T |
4537373 |
ttagtatggctagacaatccctttctttaagactcaagtagttgttacctttgaaataattctaaatgtttgattattaagaatcaaaatttattataac |
4537472 |
T |
|
| Q |
210 |
ttttaatctcgattttattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgact-aaaacattca |
308 |
Q |
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| T |
4537473 |
ttttaatctcgattttattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattca |
4537572 |
T |
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| Q |
309 |
tacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacact |
408 |
Q |
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| T |
4537573 |
tacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacact |
4537672 |
T |
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| Q |
409 |
aaatttcttttactcaatcaccaaaatctataaactcgggtacttcccatcctatgc |
465 |
Q |
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| T |
4537673 |
aaatttcttttactcaatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
347 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
397 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 52084170 - 52084255
Alignment:
| Q |
88 |
tttgcttatattaatcatgattttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaataattctaa |
174 |
Q |
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| T |
52084170 |
tttgcttatacgaatcatgattttagcatggctagacaatcctttc-tttaagactcaagtcattgttacctttgaaataattctaa |
52084255 |
T |
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