View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_5 (Length: 472)
Name: NF18443_low_5
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 54267930 - 54268376
Alignment:
| Q |
8 |
gacatcatcataacggaaggtgggaggcacggattggcaaagtttttggcaataagtatctttatctcggaacatatggtaagttcaaaatctttgtctc |
107 |
Q |
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| T |
54267930 |
gacatcatcataacggaaggtgggaggcacggattggcaaagtttttggcaataagtatctttatctcggaacatatggtaagttcaaaatctttgtctc |
54268029 |
T |
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| Q |
108 |
taattatcttggcaaacaatgaaatactgtacacaccttttctttcacaaaataaaatacgtacgtacatatgaacactagataatgtacgtataaatgc |
207 |
Q |
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| T |
54268030 |
taattatcttagcaaacaatgaaatactgtacacaccttttctttcacaaaataaaatacgtacgtacatatgaacactag-tgatgtacgtataaatgc |
54268128 |
T |
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| Q |
208 |
tcgtatggtgcgtaaaatgttctttactactataattatgactagtagttaagtagctagccaggtacaacaatctaaatttatgtaggtgtatacataa |
307 |
Q |
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| T |
54268129 |
tcgtatggtgcgtaaaatgttctttactactataattatgactagtagttaagtagctagccaggtacaacaatctaaatttatgtaggtgtatacataa |
54268228 |
T |
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| Q |
308 |
taagcc-tttttcgtttcaacgttcaaatgaaaatgattttataattattgtaaacgaagaccttagaaaagtgtcattcaattcattgcttctattcat |
406 |
Q |
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| T |
54268229 |
taagccttttttcgtttcaacgttcaaatgaaaatgattttataattattgtaaacgaagaccttagaaaagtgtcattcaattcattgcttctattcct |
54268328 |
T |
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| Q |
407 |
tgaccaattcggttattactccatagtgtggctttgcatgggttatgt |
454 |
Q |
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| T |
54268329 |
tgaccaattcagttattactccatagtgtggctttgcatgggttatgt |
54268376 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 25051874 - 25051958
Alignment:
| Q |
8 |
gacatcatcataacggaaggtgggaggcacggattggcaaagtttttggcaataagtatctttatctcggaacatatggtaagtt |
92 |
Q |
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|||| ||||||||||||||||||||||| || || || | ||||||||||| || ||||||||||| |||||||||||| |||| |
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| T |
25051874 |
gacaccatcataacggaaggtgggaggctcgtatcggtagggtttttggcaacaaatatctttatcttggaacatatggttagtt |
25051958 |
T |
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