View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_6 (Length: 379)
Name: NF18443_low_6
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 25248519 - 25248168
Alignment:
| Q |
18 |
aattagatcgatgtcgacatattatttgttttttgtcatcaataaag-atactccataggatgtaaatatgattgatcttcatcctataaatatgcatgc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25248519 |
aattagatcgatgtcgacatattatttgttttttgtcatcaataaagtatactccataggatgtaaatatgattgatcttcatcctataaatatgcatgc |
25248420 |
T |
|
| Q |
117 |
aattaatatttttgttgtcatttcatgtgggaatgtgatgtggtactagctaagatgtactgtattaatttccctaagaaagcatgatctggtgcatggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
25248419 |
aattaatatttttgttgtcatttcatgtgggaatgtgatgtggtactagctaagatgtactgtattgatttccctaagaaagcatgatctgctgcatggg |
25248320 |
T |
|
| Q |
217 |
tcaaggtccattatcaagtcatttgtcttgaattggatccatatgtattacagccttcttcacactctttctattagccccaccaaaagcctctttcaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25248319 |
tcaaggtccattatcaagtcatttgtcttgaattggatccatatgtattacagccctcttcacactctttctattagccccaccaaaagcctctttcaca |
25248220 |
T |
|
| Q |
317 |
cattcataagcatgccttgcagttaatgcatgatttcttttccacacttcat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25248219 |
cattcataagcatgccttgcagttaatgcatgatttcttttccacacttcat |
25248168 |
T |
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