View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18443_low_9 (Length: 348)
Name: NF18443_low_9
Description: NF18443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18443_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 90 - 340
Target Start/End: Original strand, 31703999 - 31704249
Alignment:
| Q |
90 |
tttcactttacttattttcttttatctatatgtttctttagtaactcaatcgaagtctaataaaattgcagtggatattgcatgattggaatgatgagga |
189 |
Q |
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| T |
31703999 |
tttcactttacttattttcttttatctatatgtttctttagtaactcaatcgaagtctaataaaattgcagtggatattgcatgattggaatgacgagga |
31704098 |
T |
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| Q |
190 |
atgtgtgaaaatattaaagaattgcaaagatgcaatagcaaagaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaa |
289 |
Q |
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| T |
31704099 |
atgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaa |
31704198 |
T |
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| Q |
290 |
agcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatg |
340 |
Q |
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| T |
31704199 |
agcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
31704249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 340
Target Start/End: Original strand, 31684746 - 31684934
Alignment:
| Q |
152 |
aaattgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgcaaagatgcaatagcaaagaaaggtaaacaagggaaag |
251 |
Q |
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| T |
31684746 |
aaattacagtggatattgcatgattggaatgacgaggaatgtgtaaagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaagggaagg |
31684845 |
T |
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| Q |
252 |
tgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatg |
340 |
Q |
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| T |
31684846 |
tggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgtttatgatg |
31684934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 340
Target Start/End: Original strand, 31712440 - 31712659
Alignment:
| Q |
122 |
tttctttagtaactcaatcgaagtct-aataaaattgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgcaaagat |
220 |
Q |
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||||||| |||||||| | |||||| ||| ||||||||||||||||||||||||||||| || ||| ||||| |||| || ||||||||||| || ||| |
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| T |
31712440 |
tttctttcataactcaaacaaagtcttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggat |
31712539 |
T |
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| Q |
221 |
gcaatagcaaagaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactct |
320 |
Q |
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| T |
31712540 |
gcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactct |
31712639 |
T |
|
| Q |
321 |
tctttgatatgttgatgatg |
340 |
Q |
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|||||||||||||||||||| |
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| T |
31712640 |
tctttgatatgttgatgatg |
31712659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 340
Target Start/End: Original strand, 31735386 - 31735605
Alignment:
| Q |
122 |
tttctttagtaactcaatcgaagtct-aataaaattgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgcaaagat |
220 |
Q |
| |
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||||||| |||||||| | |||||| ||| |||||| |||||||||||||||| |||||||| || ||||||||||| |||||||||||||| || ||| |
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| T |
31735386 |
tttctttcataactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacgaagaatgtgtgaagatattaaagaattgtaaggat |
31735485 |
T |
|
| Q |
221 |
gcaatagcaaagaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactct |
320 |
Q |
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| T |
31735486 |
gcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcggttgaaacaaaactct |
31735585 |
T |
|
| Q |
321 |
tctttgatatgttgatgatg |
340 |
Q |
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|||||||||||||||||||| |
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| T |
31735586 |
tctttgatatgttgatgatg |
31735605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 156 - 340
Target Start/End: Original strand, 31715402 - 31715583
Alignment:
| Q |
156 |
tgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgcaaagatgcaatagcaaagaaaggtaaacaagggaaagtgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| || ||||||||||| |||||||||||| |||| || ||||| |
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| T |
31715402 |
tgcagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgat |
31715501 |
T |
|
| Q |
256 |
tgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatg |
340 |
Q |
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| | |||||||||||| |||| | ||||||| || || | ||||| | | |||| |||||||||||||||||| | |||||| |
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| T |
31715502 |
tatcatagacatggtggtggagaaagagaagggaaacagt---gaatcggctaaaacacaactcttctttgatatgctcatgatg |
31715583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 31703314 - 31703377
Alignment:
| Q |
27 |
taaaataaacacattaactacgttaccaatgtaaaattgat--agaggttgatatatactataa |
88 |
Q |
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| T |
31703314 |
taaaataaacacattaactacgttaccaatgtaaaattgatagagaggttgatatatactataa |
31703377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 30570921 - 30571011
Alignment:
| Q |
165 |
tattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgcaaagatgcaatagcaaagaaaggtaaacaagggaaagtgat |
255 |
Q |
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|||| ||||| ||||| ||||||||||| |||||||| ||||||| ||||| || ||||||| ||| ||||||||| ||||||||||||| |
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| T |
30570921 |
tattacatgactggaacgatgaggaatgcttgaaaatactaaagaaatgcaaggaagcaataggaaacaaaggtaaagaagggaaagtgat |
30571011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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