View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_high_23 (Length: 362)
Name: NF18444_high_23
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 45512948 - 45513299
Alignment:
| Q |
1 |
ctcaatgacaagcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctc |
100 |
Q |
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| T |
45512948 |
ctcaatgacacgcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctc |
45513047 |
T |
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| Q |
101 |
gttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccat |
200 |
Q |
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| T |
45513048 |
gttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccat |
45513147 |
T |
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| Q |
201 |
tgaatcactctacctttctggaaataatttcacttctattccattatggttcagtcactttgagaaacttacccttcttgacctttcttacaatgggctt |
300 |
Q |
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| T |
45513148 |
tgaatcactctacctttctggaaataatttcacttctattccattatggttcggtcactttgagaaacttacccttcttgacctttcttataatgggctt |
45513247 |
T |
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| Q |
301 |
tatggtcaaatacctcatgctttcacgaacttgtcatccctggttcatctca |
352 |
Q |
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| T |
45513248 |
tatggtcaaatacctcatgctttcacgaacttgtcatccctggtgcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
151 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
250 |
Q |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
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| Q |
251 |
t |
251 |
Q |
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| T |
45513624 |
t |
45513624 |
T |
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