View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_high_28 (Length: 304)
Name: NF18444_high_28
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27463722 - 27463907
Alignment:
| Q |
1 |
caaagtgaaacaatgaggtgcatattacctcttcatgtttctttaacatttttagtatatggaaaactctcttttctataataaaatatctcactaaaga |
100 |
Q |
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| T |
27463722 |
caaagtgaaacaatgaggtgcatattacctcttcatgtttctttaacatttttagtatatggaaaactctcttttctataataaaatatctcactaaaga |
27463821 |
T |
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| Q |
101 |
ataaaattctctcttttctatataattcaatcttattaattcaacctcccaaattgcgttgacgacatatcaactctccatgtgtc |
186 |
Q |
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| T |
27463822 |
ctaaaattctctcttttctatataattcaatctaattaattcaaccacccaaattgcgttgacgacatatcaactctccatgtgtc |
27463907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 27463946 - 27464052
Alignment:
| Q |
185 |
tccacattcttctatgtgaacgcatttatgcatccaatagtattcactactagtcatttgtcatttgagttacaatataatatagccgttgcaaattaaa |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27463946 |
tccacattcttctatgtgaacgcatttatgcatccaatagtattcactactagtcatttgtcatttgagttacaatataatatagccgttgcaaattaaa |
27464045 |
T |
|
| Q |
285 |
gtattat |
291 |
Q |
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||||||| |
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| T |
27464046 |
gtattat |
27464052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 27484261 - 27484336
Alignment:
| Q |
194 |
ttctatgtgaacgcatttatgcatccaatagtattcactactagtcatttgtcatttgagttacaatataatatag |
269 |
Q |
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| T |
27484261 |
ttctaggtgaacacatttttgcatccaatagtattcactaatattcatgtgtcatttgagttacgatataatatag |
27484336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 42938789 - 42938878
Alignment:
| Q |
197 |
tatgtgaacgcatttatgcatccaatagtattcactactagtcatttg--tcatttgagttacaatataatatagccgttgcaaattaaa |
284 |
Q |
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||||||||| ||||| ||||| ||||| |||||||||||| |||| || |||||||||||| ||||||||||||| | | ||||||||| |
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| T |
42938789 |
tatgtgaacacatttttgcattcaatattattcactactattcatgtgtctcatttgagttataatataatatagctgatacaaattaaa |
42938878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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