View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_high_37 (Length: 282)

Name: NF18444_high_37
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_high_37
NF18444_high_37
[»] chr2 (7 HSPs)
chr2 (84-282)||(18025561-18025759)
chr2 (147-279)||(6892911-6893043)
chr2 (147-279)||(29395383-29395515)
chr2 (179-279)||(3221442-3221542)
chr2 (230-279)||(25342123-25342172)
chr2 (230-279)||(25346606-25346655)
chr2 (190-260)||(3217001-3217071)
[»] chr6 (4 HSPs)
chr6 (120-279)||(8365910-8366069)
chr6 (120-262)||(20771959-20772101)
chr6 (233-279)||(20771914-20771960)
chr6 (220-279)||(16502251-16502311)
[»] chr5 (6 HSPs)
chr5 (120-279)||(34113986-34114145)
chr5 (151-279)||(34091636-34091764)
chr5 (119-279)||(31204839-31204999)
chr5 (198-279)||(40941446-40941521)
chr5 (175-279)||(40539379-40539483)
chr5 (220-275)||(35000432-35000488)
[»] chr4 (4 HSPs)
chr4 (120-279)||(56290562-56290716)
chr4 (183-279)||(46203837-46203933)
chr4 (120-207)||(48197281-48197363)
chr4 (243-279)||(28623760-28623796)
[»] chr3 (4 HSPs)
chr3 (147-279)||(37494395-37494526)
chr3 (148-279)||(26569856-26569987)
chr3 (147-279)||(11992814-11992944)
chr3 (162-279)||(9688932-9689048)
[»] chr8 (5 HSPs)
chr8 (147-279)||(20189724-20189853)
chr8 (198-279)||(23004065-23004146)
chr8 (227-279)||(1089939-1089991)
chr8 (123-271)||(18964684-18964831)
chr8 (232-271)||(18952639-18952678)
[»] chr7 (4 HSPs)
chr7 (147-279)||(44274236-44274365)
chr7 (177-279)||(46841960-46842062)
chr7 (225-274)||(31380086-31380136)
chr7 (215-279)||(13096319-13096384)
[»] scaffold0004 (1 HSPs)
scaffold0004 (118-279)||(35548-35707)
[»] chr1 (3 HSPs)
chr1 (118-282)||(3967822-3967986)
chr1 (120-279)||(41012658-41012817)
chr1 (198-273)||(34570758-34570833)
[»] scaffold0311 (1 HSPs)
scaffold0311 (226-279)||(1434-1487)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 18025561 - 18025759
Alignment:
Q  84 acgggatcgcggtaaaatcaacttcatagctactacctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggag 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18025561 acgggatcgcggtaaaatcaacttcatagctactacctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacaatgcgggag 18025660  T
Q  184 cggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaagca 282  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18025661 cggggcgcgtagcaggcactattttggtagtgcggccactaataaatttaatactagatacgatactattcaaaaagaaatactaaaataccttaagca 18025759  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 6893043 - 6892911
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    ||||||||||||| ||||||||||| | |||| |||||||||||    || |||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  6893043 cggcgcggccaacccaataattggcgcggtgcaggagcggggcgttgtgcgggcgctatttcggtggtgtggccactaataaatttaatactagatacca 6892944  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    || ||||||||||||||||||||||||||||||    
T  6892943 tattattcaaaaagaaatactaaaataccttaa 6892911  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 29395383 - 29395515
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||  ||||| ||| ||| ||| ||||||| |||||||||||||| | |||||    
T  29395383 cggcgcggccaacccaataattggcggggtgcgggagcggggcgcgtagcgtgcgctttttcggtggtgcggccactaataaatttaatacttggtacca 29395482  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||| |||| |||||||||||||||||||||    
T  29395483 tactatccaaagagaaatactaaaataccttaa 29395515  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 3221442 - 3221542
Alignment:
Q  179 gggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaatacctta 278  Q
    ||||||| || |||||||||||||| ||| ||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3221442 gggagcgtggtgcgtagcaggcgctgtttcggttgtgtggccactattaaatttaatactaaataccatactattcaaaaagaaatactaaaatacctta 3221541  T
Q  279 a 279  Q
    |    
T  3221542 a 3221542  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 25342123 - 25342172
Alignment:
Q  230 tttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25342123 tttaatactagataccatactattcaaaaagaaatactaaaataccttaa 25342172  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 25346606 - 25346655
Alignment:
Q  230 tttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25346606 tttaatactagataccatactattcaaaaagaaatactaaaataccttaa 25346655  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 3217071 - 3217001
Alignment:
Q  190 gcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaag 260  Q
    |||||||||||||| ||| ||| ||||| ||||| ||||||||||||||| |||||||||||||| |||||    
T  3217071 gcgtagcaggcgctgtttcggtggtgtgaccactaataaatttaatactaaataccatactattctaaaag 3217001  T

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Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 8365910 - 8366069
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggc 219  Q
    |||||||||||||||||||||  |||  ||||||||||||  |||||||||| | |||||||||| ||||| ||||| |||||||||| ||| |||||||    
T  8365910 ctctgttgtcaatgcggaaatgcggcgtggcgcggccaacctaataattggcgcggtgcgggagcagggcgtgtagcgggcgctatttcggtggtgtggc 8366009  T
Q  220 cactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8366010 cactaataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 8366069  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 20772101 - 20771959
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggc 219  Q
    |||| ||||||||| |||||| |||| |||| |  |||||  |||||||||| | ||||||||||||||||||||||  | ||||||| ||| ||| |||    
T  20772101 ctctattgtcaatgtggaaatgtggcgcggcacaaccaaccaaataattggcgcggtgcgggagcggggcgcgtagcgtgtgctatttcggtggtgcggc 20772002  T
Q  220 cactgataaatttaatactagataccatactattcaaaaagaa 262  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  20772001 cactaataaatttaatacttgataccatactattcaaaaagaa 20771959  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 20771960 - 20771914
Alignment:
Q  233 aatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  20771960 aatacttgataccatactattcaaaaagaaatactaaaataccttaa 20771914  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 16502251 - 16502311
Alignment:
Q  220 cactgataaatttaatactaga-taccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||| ||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||    
T  16502251 cactaatatatttaatactaaaataccatattgttcaaaaagaaatactaaaataccttaa 16502311  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 34114145 - 34113986
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggc 219  Q
    ||||||||| |||||||||||  |||| |||| |||||||  ||||||||||   |||||||||| ||||||||||| |||||||||| ||| |||||||    
T  34114145 ctctgttgtgaatgcggaaatgcggcatggcgtggccaacctaataattggcgtggtgcgggagcagggcgcgtagcgggcgctatttcggtggtgtggc 34114046  T
Q  220 cactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34114045 cactaataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 34113986  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 34091636 - 34091764
Alignment:
Q  151 gcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatact 250  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||||| ||| |||||| ||| |||  |||||| ||||||||||||||||||||||||||    
T  34091636 gcggccaacccaataattggcacggtgcgggagtggggtgcgtagcgggcactatttcggtggtgcagccactaataaatttaatactagataccatact 34091735  T
Q  251 attcaaaaagaaatactaaaataccttaa 279  Q
    |||||||||||||||||||||||||||||    
T  34091736 attcaaaaagaaatactaaaataccttaa 34091764  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 279
Target Start/End: Original strand, 31204839 - 31204999
Alignment:
Q  119 cctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtgg 218  Q
    ||||||||||||||||  |||| |||| | | |||||||||  || ||||||    |||||||||| | | ||||||| ||||||||||  || ||||||    
T  31204839 cctctgttgtcaatgcaaaaatgtggcgcagagcggccaacaaaaaaattggagtggtgcgggagcagagtgcgtagcgggcgctatttcagtggtgtgg 31204938  T
Q  219 ccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  31204939 ccactaataaatttaatactaaataccatactattcaaaaagaaatgcaaaaataccttaa 31204999  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 40941446 - 40941521
Alignment:
Q  198 ggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||||||| ||| ||| ||||||| ||||||||||||||| ||||      |||||||||||||||||||||||||||||    
T  40941446 ggcgctatttcggtggtggggccactaataaatttaatactaaatac------attcaaaaagaaatactaaaataccttaa 40941521  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 40539379 - 40539483
Alignment:
Q  175 gtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagat-accatactattcaaaaagaaatactaaaata 273  Q
    ||||||||||||| || ||||| | |||||||||| | | |  | |||||||| ||||||||||| |  |||||| | |||||||||| |||||||||||    
T  40539379 gtgcgggagcgggtcgtgtagcggacgctattttg-tggcgcagacactgatatatttaatactaaaagaccatattgttcaaaaagatatactaaaata 40539477  T
Q  274 ccttaa 279  Q
    ||||||    
T  40539478 ccttaa 40539483  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 35000488 - 35000432
Alignment:
Q  220 cactgataaatttaatactaga-taccatactattcaaaaagaaatactaaaatacc 275  Q
    |||| ||| ||||||||||| | |||||||||||||||||  |||||||||||||||    
T  35000488 cactaatatatttaatactaaaataccatactattcaaaacaaaatactaaaatacc 35000432  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 56290716 - 56290562
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggc 219  Q
    |||||||||||||||||||||      |||| |||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||| |||    
T  56290716 ctctgttgtcaatgcggaaat-----gcggcacggccaacccaataattggcgcggtgcgggggcggggcgcgtagcaggcgctattttggtggtgcggc 56290622  T
Q  220 cactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  56290621 cgctaataaatttaatactagataccatactattaaaaaagaaatactaaaataccttaa 56290562  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 46203933 - 46203837
Alignment:
Q  183 gcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||  || |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46203933 gcggggcgcggtgcgggcgctatttcggtggtgcggccactaataaatttaatactagataccatactattcaaaaagaaatactaaaataacttaa 46203837  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 48197363 - 48197281
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 207  Q
    |||||||||||||||||||||      ||||||||||||| ||| ||||| | | |||||||||||||| ||||||  ||||||||||    
T  48197363 ctctgttgtcaatgcggaaatg-----cggcgcggccaacccaaaaattgacgcggtgcgggagcggggggcgtagagggcgctattt 48197281  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 28623760 - 28623796
Alignment:
Q  243 accatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28623760 accatattgttcaaaaagaaatactaaaataccttaa 28623796  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 37494395 - 37494526
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||  |||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  37494395 cggcgcggccaactcaataattggcgcggtgcgggagcggggcgggtagtgggcgctatttcgttagcgtggccactgataaatttaatactagatacca 37494494  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||| |||||||||||||||||||||||||||    
T  37494495 tacta-tcaaaaagaaatactaaaataccttaa 37494526  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 26569987 - 26569856
Alignment:
Q  148 ggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccat 247  Q
    |||||| ||||| ||||||||||||| ||||||||||||||  |||||| |||||||||| ||  ||| ||||||| |||||||||||| ||||||||||    
T  26569987 ggcgcgaccaacccaataattggcacggtgcgggagcggggtacgtagcgggcgctatttcggcggtgcggccactaataaatttaataatagataccat 26569888  T
Q  248 actattcaaaaagaaatactaaaataccttaa 279  Q
    |||| |||||||||||||||||||||||||||    
T  26569887 actactcaaaaagaaatactaaaataccttaa 26569856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 11992814 - 11992944
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    |||||| |||||| ||| ||||||| | |||||||||| ||| ||||||| || ||||||| ||| |||  |||||| |||||| |||||||| ||||||    
T  11992814 cggcgcagccaacccaaaaattggcgcggtgcgggagcagggtgcgtagcgggggctatttcggtggtg--gccactaataaatataatactaaatacca 11992911  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||||||||||||||||||||||||||||||    
T  11992912 tactattcaaaaagaaatactaaaataccttaa 11992944  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 9688932 - 9689048
Alignment:
Q  162 aataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaaga 261  Q
    |||||||||| | |||| ||||||||||||||||| |||||||||||||| ||| | ||||| ||||||||||||| |||||||||  ||||||||||||    
T  9688932 aataattggcgcggtgcaggagcggggcgcgtagcgggcgctattttggtggtgcgaccactaataaatttaatac-agataccattttattcaaaaaga 9689030  T
Q  262 aatactaaaataccttaa 279  Q
    ||||  ||||||||||||    
T  9689031 aatagcaaaataccttaa 9689048  T

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Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 20189724 - 20189853
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    ||||||||||||||||||   |||| | ||||||||||||||||||||||||||||||||| ||| ||| || |||| ||||||||||| ||||||||||    
T  20189724 cggcgcggccaactcaat---tggcgcggtgcgggagcggggcgcgtagcaggcgctatttcggtggtgcggacactaataaatttaatcctagatacca 20189820  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||||||||||||||||||||||||||||||    
T  20189821 tactattcaaaaagaaatactaaaataccttaa 20189853  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 23004146 - 23004065
Alignment:
Q  198 ggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23004146 ggcgctatttcagtggtgcggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 23004065  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 1089991 - 1089939
Alignment:
Q  227 aaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1089991 aaatttaatactaaatatcatactattcaaaaagaaatactaaaataccttaa 1089939  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 18964684 - 18964831
Alignment:
Q  123 tgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccac 222  Q
    ||||||| |||||||||| |||| |||||| ||||||  || ||||||||| |||||||||  ||||  ||| |||| | ||||| ||| ||  |||| |    
T  18964684 tgttgtcgatgcggaaatgtggcgcggcgcagccaacctaaaaattggcacggtgcgggaggagggcatgtatcaggtgttatttcggtggtacggccgc 18964783  T
Q  223 tgataaatttaatactagataccatactattcaaaaagaaatactaaaa 271  Q
    | ||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  18964784 taataaatt-aatacttaatatcatactattcaaaaagaaatactaaaa 18964831  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 18952678 - 18952639
Alignment:
Q  232 taatactagataccatactattcaaaaagaaatactaaaa 271  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  18952678 taatacttaataccatactattcaaaaagaaatactaaaa 18952639  T

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Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 44274236 - 44274365
Alignment:
Q  147 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagatacca 246  Q
    ||||||||||||||||||   |||| | ||||||||||||||||||||||||||||||||| ||| ||| || |||| ||||||||||| ||||||||||    
T  44274236 cggcgcggccaactcaat---tggcgcggtgcgggagcggggcgcgtagcaggcgctatttcggtggtgcggacactaataaatttaatcctagatacca 44274332  T
Q  247 tactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||||||||||||||||||||||||||||||    
T  44274333 tactattcaaaaagaaatactaaaataccttaa 44274365  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 46842062 - 46841960
Alignment:
Q  177 gcgggagcggggcgcgtagcaggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaatacct 276  Q
    ||||||| |||  ||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  46842062 gcgggagtgggttgcgtagcgggcgctatttcggtggtgtggccactaataaatttaatactaaataccatactattaaaaaagaaatactaaaatacct 46841963  T
Q  277 taa 279  Q
    |||    
T  46841962 taa 46841960  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 31380136 - 31380086
Alignment:
Q  225 ataaatttaatactagataccatactattcaa-aaagaaatactaaaatac 274  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  31380136 ataaatttaatactagataccatactattcaataataaaatactaaaatac 31380086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 13096384 - 13096319
Alignment:
Q  215 gtggccactgataaatttaatactaga-taccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||| |||| ||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||    
T  13096384 gtggacactaatatatttaatactaaaataccatattgttcaaaaagaaatactaaaataccttaa 13096319  T

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Target: scaffold0004 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 35548 - 35707
Alignment:
Q  118 acctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtg 217  Q
    |||||||||||||||||||||||  ||| |  |||||||||||||||||||||| | ||||||||||||||| |||||| |  ||||||| ||| |||      
T  35548 acctctgttgtcaatgcggaaatgcggcgcatcgcggccaactcaataattggcgcggtgcgggagcggggcacgtagcggatgctatttcggttgtgca 35647  T
Q  218 gccactgataaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    |||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  35648 gccactaataaatttaatactagataccatactatt--aaaaaaaatactaaaataccttaa 35707  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 3967986 - 3967822
Alignment:
Q  118 acctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtg 217  Q
    |||||||||||||| ||||||||  ||||||||||||||| | ||| ||||||  | | | ||||| ||| |||||||| |||||||||||| | | | |    
T  3967986 acctctgttgtcaaagcggaaatgcggcacggcgcggccaccccaaaaattggtgcggcgagggagtgggtcgcgtagcgggcgctattttg-tggcgcg 3967888  T
Q  218 gccactgataaatttaatactagat-accatactattcaaaaagaaatactaaaataccttaagca 282  Q
    | |||| ||| ||||||||||| |  |||||| | |||||||||||||||||||||||||||||||    
T  3967887 gacactaatatatttaatactaaaagaccatattgttcaaaaagaaatactaaaataccttaagca 3967822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 41012658 - 41012817
Alignment:
Q  120 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttggtagtgtggc 219  Q
    |||||||||||| ||||||||  ||| ||||||||||| ||||  ||||||  | |||||||||||||| ||||||| ||||||||||| || | | ||     
T  41012658 ctctgttgtcaaagcggaaatgcggcgcggcgcggccacctcacaaattggtgcggtgcgggagcggggtgcgtagcgggcgctatttt-gtggcgcgga 41012756  T
Q  220 cactgataaatttaatact-agataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    | || | | |||||||||| | |||||||| | ||||||||||||||||||||||||||||    
T  41012757 ccctaaaatatttaatactaaaataccatattgttcaaaaagaaatactaaaataccttaa 41012817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 34570833 - 34570758
Alignment:
Q  198 ggcgctattttggtagtgtggccactgataaatttaatactagataccatactattcaaaaagaaatactaaaata 273  Q
    ||||||||||  || ||| ||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  34570833 ggcgctatttcagtggtgcggccactaataaatttaattctaaatactatactattcaaaaagaaatactaaaata 34570758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 1487 - 1434
Alignment:
Q  226 taaatttaatactagataccatactattcaaaaagaaatactaaaataccttaa 279  Q
    ||||||||||||| |||||||||||||| |||||  ||||||||||||||||||    
T  1487 taaatttaatacttgataccatactattaaaaaaataatactaaaataccttaa 1434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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