View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_high_4 (Length: 671)
Name: NF18444_high_4
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 252 - 623
Target Start/End: Complemental strand, 14680889 - 14680531
Alignment:
| Q |
252 |
atatccaaattagtctctcataattacatacaggttacacattagtccgaatgttagagcctcgatactgcagtgttcttggaacattctgcaacatgta |
351 |
Q |
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| T |
14680889 |
atatccaaattagtctctcataattacatacaggttacacattattccgaatgttagagcctcgatactgcagtgttcttg-aacactctgcaacatgta |
14680791 |
T |
|
| Q |
352 |
tgatttaaaatatgtgtctttaacagataagtaaaattgtcaacaactaataagtgaaatttaagggaagtttaattgaggggctaatgtgtcgcccata |
451 |
Q |
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| T |
14680790 |
tgatttaaaatacgtgtctttaacagataagtaaaattgtcaccaactaataagtgaa-----------gtttaattgaggggctaatgtgtcgcccata |
14680702 |
T |
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| Q |
452 |
tacaattgttagggactaatttgggatttagtcttacaaatattgaattcaataaaaatgataggattaatgctttggtagatttcttggcagcttagcc |
551 |
Q |
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| T |
14680701 |
tacaattgttagggactaatttgggatttagtcatacaaatattgaattcaatacaaatgataggattaatgctttggtagatttcttggcagcttagcc |
14680602 |
T |
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| Q |
552 |
tgagaatgtgattttcctgctctataaagagaagatgtagggaactgagagccatgaatgttgactgctatg |
623 |
Q |
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| T |
14680601 |
tgag-atgtgattttcctgctctataaagagaagatgtagggaactgagagccatgaatgttgactgctatg |
14680531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 467 - 617
Target Start/End: Original strand, 14683177 - 14683334
Alignment:
| Q |
467 |
ctaatttggg-atttagtcttacaaatattgaattcaataaaaatgataggatta------atgctttggtagatttcttggcagcttagcctgagaatg |
559 |
Q |
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| T |
14683177 |
ctaatttgggtacttagtcgtataaatattgaattcaatacagatgataggattagggttaatgatttggtagatttctaggtagtttagcctgagaatg |
14683276 |
T |
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| Q |
560 |
tgattttcctgctctataaagagaagatgtagggaactgagagccatgaatgttgact |
617 |
Q |
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| T |
14683277 |
tgattttcctgctgtataaagacaaggtgtagggaactgtgagccatgaatgttgact |
14683334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 28422915 - 28423076
Alignment:
| Q |
149 |
ctttataaatagactaaatactgtattagtccccgacaaattggatgcgactcgatgtagtttatgnnnnnnngtaacac-caaattacgtgtcgacaaa |
247 |
Q |
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| T |
28422915 |
ctttataaataaactaaatattgaattagcccctaacaaattgaacgcgactcaatgtagtttatgacaaaa-gtaatactcaaattacttcctgacaaa |
28423013 |
T |
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| Q |
248 |
attaatatccaaattagtctctcataattacatacaggttacacattagtccgaatgttagag |
310 |
Q |
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| T |
28423014 |
attaatatccaaattagtctctcacagttacatacaggtaacacattagtccctatgttagag |
28423076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 41659408 - 41659357
Alignment:
| Q |
39 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaag |
90 |
Q |
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| T |
41659408 |
aaagaagaataatgaattggagttggaagtttgtgagctgagaaagttgaag |
41659357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 14691261 - 14691384
Alignment:
| Q |
149 |
ctttataaatagactaaatactgtattagtccccgacaaattggatgcgactcgatgtagtttatgnnnnnnngtaacac-caaattacgtgtcgacaaa |
247 |
Q |
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||||||||||||||| ||||| | |||||| | |||||||||| |||||||||||||||||||| |||| || |||||||| | |||||| |
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| T |
14691261 |
ctttataaatagactgaataccgaattagttcgtaacaaattggacgcgactcgatgtagtttatgacaaaaagtaatactcaaattactttcggacaaa |
14691360 |
T |
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| Q |
248 |
attaatatccaaattagtctctca |
271 |
Q |
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|||||||||||||||||||||||| |
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| T |
14691361 |
attaatatccaaattagtctctca |
14691384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 41687944 - 41688003
Alignment:
| Q |
51 |
tgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
110 |
Q |
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| T |
41687944 |
tgaattggagttcgaagtttgtgagctgagaaagttgaatgaaaaatgggtcgatgatag |
41688003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 41708781 - 41708710
Alignment:
| Q |
39 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
110 |
Q |
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| T |
41708781 |
aaagaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatag |
41708710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 41717853 - 41717782
Alignment:
| Q |
39 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
110 |
Q |
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| T |
41717853 |
aaagaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatag |
41717782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 654
Target Start/End: Complemental strand, 14680518 - 14680486
Alignment:
| Q |
622 |
tggaccaaaacaatttacttcatgggctgtagt |
654 |
Q |
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| T |
14680518 |
tggaccaaaacaatttacttcatgggctgtagt |
14680486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 14690993 - 14691034
Alignment:
| Q |
30 |
tgagctgaaaaagaagaataatgaattggagttggaagtttc |
71 |
Q |
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| T |
14690993 |
tgagctaaaaatgaataataatgaattggagttggaagtttc |
14691034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 41686400 - 41686347
Alignment:
| Q |
39 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaagga |
92 |
Q |
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| T |
41686400 |
aaagaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaagga |
41686347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 41688296 - 41688360
Alignment:
| Q |
495 |
tgaattcaataaaaatgataggattaatgctttggtagatttcttggcagcttagcctgagaatg |
559 |
Q |
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||||||||||| || |||| |||||||||||||||||||| ||| | ||||| ||||| ||||| |
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| T |
41688296 |
tgaattcaatacaagtgattggattaatgctttggtagatctctaagtagcttggcctgggaatg |
41688360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 2439120 - 2439189
Alignment:
| Q |
39 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgat |
108 |
Q |
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||||||||| ||| ||||||||||||| | || ||||||||||||||| ||||||| |||| |||||| |
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| T |
2439120 |
aaagaagaacaataaattggagttggatgcttgtgagctgagaaagttggtggaaaaatgggtggatgat |
2439189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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