View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_high_40 (Length: 253)

Name: NF18444_high_40
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_high_40
NF18444_high_40
[»] chr3 (16 HSPs)
chr3 (57-250)||(11837020-11837213)
chr3 (75-240)||(51880383-51880548)
chr3 (75-250)||(52426134-52426298)
chr3 (78-243)||(44890485-44890650)
chr3 (87-238)||(20601414-20601565)
chr3 (78-240)||(36159008-36159159)
chr3 (75-235)||(21523928-21524089)
chr3 (71-216)||(22990326-22990471)
chr3 (73-240)||(9503645-9503812)
chr3 (127-250)||(27483448-27483571)
chr3 (126-250)||(43464617-43464741)
chr3 (18-61)||(11837372-11837415)
chr3 (164-250)||(29563751-29563837)
chr3 (78-194)||(53073361-53073477)
chr3 (126-216)||(29697358-29697448)
chr3 (149-185)||(2222098-2222134)
[»] chr2 (8 HSPs)
chr2 (75-240)||(16202211-16202376)
chr2 (75-250)||(39848619-39848794)
chr2 (73-240)||(9716399-9716565)
chr2 (75-240)||(5880059-5880224)
chr2 (73-173)||(38556674-38556774)
chr2 (127-187)||(5712699-5712759)
chr2 (81-193)||(12677937-12678048)
chr2 (81-216)||(16054796-16054931)
[»] chr7 (13 HSPs)
chr7 (75-239)||(25072509-25072673)
chr7 (106-250)||(37155693-37155837)
chr7 (75-240)||(41015933-41016098)
chr7 (74-238)||(9270969-9271135)
chr7 (78-250)||(5033926-5034091)
chr7 (154-247)||(32555860-32555953)
chr7 (78-250)||(25685120-25685292)
chr7 (84-240)||(32420186-32420342)
chr7 (127-250)||(29171677-29171800)
chr7 (157-250)||(42672666-42672759)
chr7 (75-240)||(18330914-18331079)
chr7 (75-198)||(40727310-40727432)
chr7 (84-216)||(28032123-28032254)
[»] scaffold0003 (1 HSPs)
scaffold0003 (75-240)||(325054-325218)
[»] chr4 (18 HSPs)
chr4 (75-240)||(22319799-22319964)
chr4 (74-250)||(10183481-10183657)
chr4 (75-216)||(22748979-22749120)
chr4 (75-248)||(7912706-7912879)
chr4 (106-250)||(12154377-12154521)
chr4 (75-158)||(26659988-26660071)
chr4 (75-240)||(55957731-55957896)
chr4 (73-250)||(11432564-11432741)
chr4 (167-250)||(6829146-6829229)
chr4 (132-250)||(4576795-4576912)
chr4 (85-187)||(56091997-56092099)
chr4 (149-250)||(40630053-40630154)
chr4 (85-214)||(4435390-4435520)
chr4 (148-250)||(6893133-6893235)
chr4 (73-120)||(32519600-32519647)
chr4 (85-147)||(6829231-6829293)
chr4 (166-216)||(37666121-37666171)
chr4 (202-238)||(26660073-26660109)
[»] chr1 (21 HSPs)
chr1 (132-250)||(4362078-4362196)
chr1 (84-241)||(22863081-22863238)
chr1 (75-250)||(16010726-16010901)
chr1 (84-250)||(2758845-2759011)
chr1 (138-243)||(1826514-1826619)
chr1 (133-216)||(8424571-8424654)
chr1 (69-240)||(41158143-41158313)
chr1 (143-250)||(45377693-45377800)
chr1 (149-243)||(45756317-45756411)
chr1 (75-240)||(4441294-4441459)
chr1 (75-240)||(39737127-39737292)
chr1 (75-250)||(45338908-45339072)
chr1 (84-198)||(35718252-35718366)
chr1 (123-216)||(10158136-10158229)
chr1 (76-240)||(25412410-25412574)
chr1 (149-240)||(7799204-7799294)
chr1 (151-250)||(30562169-30562268)
chr1 (129-250)||(51370089-51370210)
chr1 (74-132)||(17391884-17391942)
chr1 (79-216)||(642835-642972)
chr1 (167-243)||(3022574-3022650)
[»] chr8 (26 HSPs)
chr8 (75-240)||(35458608-35458773)
chr8 (138-240)||(2510372-2510474)
chr8 (75-240)||(22738423-22738587)
chr8 (75-216)||(30469206-30469347)
chr8 (129-213)||(39629156-39629239)
chr8 (129-213)||(39638706-39638789)
chr8 (79-233)||(18020318-18020471)
chr8 (175-240)||(44652643-44652708)
chr8 (97-213)||(254700-254815)
chr8 (97-213)||(661043-661158)
chr8 (97-213)||(846841-846956)
chr8 (136-216)||(2374166-2374246)
chr8 (73-187)||(31955871-31955984)
chr8 (75-216)||(39139167-39139309)
chr8 (156-243)||(17948909-17948996)
chr8 (84-210)||(2621521-2621647)
chr8 (159-240)||(17989045-17989124)
chr8 (154-239)||(1222452-1222537)
chr8 (181-250)||(9617228-9617297)
chr8 (75-160)||(40691031-40691116)
chr8 (81-241)||(19973089-19973249)
chr8 (81-241)||(21019584-21019744)
chr8 (75-140)||(17948841-17948906)
chr8 (75-192)||(31588088-31588205)
chr8 (84-216)||(10710258-10710390)
chr8 (139-239)||(35223551-35223650)
[»] chr5 (14 HSPs)
chr5 (128-239)||(22859792-22859903)
chr5 (85-240)||(19298198-19298353)
chr5 (97-240)||(40514612-40514755)
chr5 (84-250)||(40201954-40202120)
chr5 (164-249)||(35319210-35319295)
chr5 (84-240)||(36439747-36439903)
chr5 (149-243)||(28207446-28207540)
chr5 (78-216)||(29570900-29571038)
chr5 (138-250)||(10918201-10918313)
chr5 (76-250)||(40417468-40417642)
chr5 (135-243)||(16885333-16885441)
chr5 (75-250)||(39981442-39981617)
chr5 (148-240)||(12580246-12580338)
chr5 (75-240)||(15529906-15530075)
[»] chr6 (5 HSPs)
chr6 (85-239)||(5331337-5331491)
chr6 (75-240)||(5167035-5167200)
chr6 (143-250)||(10667454-10667561)
chr6 (73-240)||(24556748-24556911)
chr6 (143-240)||(24073686-24073783)
[»] scaffold0373 (2 HSPs)
scaffold0373 (167-250)||(7191-7274)
scaffold0373 (85-147)||(7127-7189)
[»] scaffold1138 (1 HSPs)
scaffold1138 (74-132)||(30-88)
[»] scaffold0330 (1 HSPs)
scaffold0330 (126-203)||(11126-11203)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 11837213 - 11837020
Alignment:
Q  57 catcatgatcgcgttgattagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctg 156  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||  || |||||||||||||||||||||||||||||||    
T  11837213 catcatgatcgcgttgattaaggatgagaataggttaggccgagctaggctttgcaaggtctaagcctggcctgtcaaatttttgtaaggcttaagcctg 11837114  T
Q  157 gcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||  |||||||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  11837113 gcctgcaacctgtcatagacttacattttaggcctgagtctgaccttatgaaagcctgattaggcctactagcttgtttaaaagcatgtttcat 11837020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 51880548 - 51880383
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||   | ||||| || |||||| ||| || |||| ||| | ||||| |||||||||    
T  51880548 tagggatgagaataggttaggccgagttagactttgcaaggcctaagcttggcctgccatatttttttaaagcctaagtctgacttgcggtctgtcatag 51880449  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || || |||||||| |||||||||  ||||||||||||||||  ||||| ||||||||||||||||    
T  51880448 gcctactttttaggcctgagtctggtcttatgaaagcctgatatggcctgctagcctgtttaaaag 51880383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 52426134 - 52426298
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||| || |||||| ||| |||||||||| |||| ||| | ||| ||||||||||||| ||           ||||||||||||||||    
T  52426134 tagggatgagaataggctaagccgagctaggctttgcaaggcctaagtctggtctgacaaatttttgtaaagc-----------ctgcggcctgtcatag 52426222  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  52426223 gcttactttttaggtctgagtctggccttatgaaagtctgattaggcctactagcctgtttaaaagcctatttcat 52426298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 44890485 - 44890650
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    ||||| ||||||| ||||| ||| ||| |||||||| | | || ||| |||||||||||||||||||||| |||| |||| || |||| ||||||| |||    
T  44890485 ggatgggaataggctaggctgagctaggctttgcaaagccaaagtctggcctgtcaaatttttgtaaggcctaagtctggtctacggcatgtcataagct 44890584  T
Q  178 tattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtct 243  Q
    || |||||||| ||||||||| ||| |||||||| ||||||||| | |||||||||||||||||||    
T  44890585 tactttttaggcctgagtctggcctaatgaaagcttgattaggcttgctagcctgtttaaaagtct 44890650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 20601414 - 20601565
Alignment:
Q  87 taggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttttta 186  Q
    |||| ||||||||| ||| |||||||||| || |  || ||||| |||||||||  ||||| |||||||||||||||| ||||||||| |||| ||||||    
T  20601414 taggctaggccgagctaggctttgcaaggcctgagcctggcctgccaaattttttgaaggcctaagcctggcctgcggtctgtcatagacttacttttta 20601513  T
Q  187 ggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaa 238  Q
    |||||||||||  |||| |||||||||| | |||||| ||||||| ||||||    
T  20601514 ggtctgagtcttgccttctgaaagcctgctaaggcctgctagcctatttaaa 20601565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 36159008 - 36159159
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    ||||||||||||||||| | |||||||||||||||||  |||| | |   |||||||||||||||||||            |||||||||||||||| ||    
T  36159008 ggatgagaataggttagactgagttagactttgcaagacctaagtttgatctgtcaaatttttgtaaggt-----------ctgcggcctgtcatagact 36159096  T
Q  178 tattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||  |||| ||||||||||    
T  36159097 tattttttaggcctgagtctgaccttatgaaagtctgattaggcctgttagcatgtttaaaag 36159159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 21524089 - 21523928
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgt-aaggcttaagcctggcctgcggcctgtcata 173  Q
    |||||||| ||||||| ||||| ||||||| ||||||||||||| |  || ||||  ||||||||| | ||||| ||||||||||||||||  | |||||    
T  21524089 tagggatgggaataggataggctgagttaggctttgcaaggtctgagcctggccta-caaatttttttgaaggcctaagcctggcctgcggtatatcata 21523991  T
Q  174 ggctta-ttttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgttt 235  Q
    |||||| ||||||||| ||||||||| |||| ||||||||||||  ||||| |||||||||||    
T  21523990 ggcttacttttttaggcctgagtctggccttctgaaagcctgatacggcctgctagcctgttt 21523928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 22990326 - 22990471
Alignment:
Q  71 tgattagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtc 170  Q
    ||||||||| || ||||||| ||||| ||||||| ||||||||||  | || |||||||| |||||||||  ||||| ||||||||| ||  ||||||||    
T  22990326 tgattaggggtgggaataggataggctgagttaggctttgcaaggcttgaacctagcctgccaaatttttcgaaggcctaagcctggtctatggcctgtc 22990425  T
Q  171 ataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||||||| ||||| || ||||||||| |||| | |||| |||||    
T  22990426 ataggcttacttttttggcctgagtctgcccttctaaaagtctgat 22990471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 9503645 - 9503812
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    |||||||||  ||||||||||||||||||||| |||||||||| ||||  || ||||| || ||||||  || || |||| ||| ||||  |||||||||    
T  9503645 attagggataggaataggttaggccgagttaggctttgcaaggcctaagcctggcctgccatattttttaaaagcctaagtctgacctgttgcctgtcat 9503744  T
Q  173 aggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || | || |||| |||  ||||||||||||| |||||| |||||  | ||| ||||||||||||||||    
T  9503745 agacctacttttaaggcttgagtctgaccttttgaaagtctgatatgacctgctagcctgtttaaaag 9503812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 27483571 - 27483448
Alignment:
Q  127 cctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctact 226  Q
    ||||||| |||||| |||||| |||||||| | | |  ||| |||||  |||| ||||||||||||||| ||||||||| |||| |||||||| ||||||    
T  27483571 cctgtcacatttttttaaggcctaagcctgacttacaacctatcataatcttactttttaggtctgagtatgaccttataaaagtctgattagacctact 27483472  T
Q  227 agcctgtttaaaagtctgtttcat 250  Q
    |  |||||||||||||| ||||||    
T  27483471 aatctgtttaaaagtctatttcat 27483448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 43464741 - 43464617
Alignment:
Q  126 gcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctac 225  Q
    |||| |||| |||||  ||||| ||| |||||| |||| ||||||||||||||| ||||||||  |||| |||||||| |||||| ||| |  | ||| |    
T  43464741 gcctatcaatttttttgaaggcctaaacctggcatgcgacctgtcataggcttactttttaggcttgagcctgaccttctgaaagtctggtacgacctgc 43464642  T
Q  226 tagcctgtttaaaagtctgtttcat 250  Q
    ||||| ||||||||| |||||||||    
T  43464641 tagcccgtttaaaagcctgtttcat 43464617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 11837415 - 11837372
Alignment:
Q  18 gacttcgctttagaatcgaaagctaccatagatgtttttcatca 61  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  11837415 gacttcactttagaatcgagagctaccatagatgtttttcatca 11837372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 29563837 - 29563751
Alignment:
Q  164 gcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||||||| |||| |||||||| ||||||||| |||| ||  ||||||||  | | |  |||||||||||||||||||||||||    
T  29563837 gcctgtcatagacttactttttaggcctgagtctggccttctggtagcctgatacgacatgttagcctgtttaaaagtctgtttcat 29563751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 53073361 - 53073477
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    ||||| ||||| | ||| ||||||||| |||||||||| |||| |||  |||| || |||||| ||| |  |||| ||  ||||||| |||||||||||     
T  53073361 ggatgggaatatgctagtccgagttaggctttgcaaggcctaagtctgacctgccatatttttttaaagtctaagtctaacctgcggtctgtcataggcc 53073460  T
Q  178 tattttttaggtctgag 194  Q
    || ||||||||||||||    
T  53073461 tactttttaggtctgag 53073477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 29697358 - 29697448
Alignment:
Q  126 gcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||| |||||||||  ||||  |||| ||||||| |||||| |||||| |||| |||||| |  ||||||||||||| |||||| |||||    
T  29697358 gcctgccaaattttttgaaggtctaagtctggcctacggcctatcatagacttactttttatgcttgagtctgaccttttgaaagtctgat 29697448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 2222134 - 2222098
Alignment:
Q  149 taagcctggcctgcggcctgtcataggcttatttttt 185  Q
    |||||||||||| |||||| |||||||||||||||||    
T  2222134 taagcctggcctacggcctttcataggcttatttttt 2222098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 16202376 - 16202211
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||| ||||||| || |||||| ||| |||||||||| |||| ||| |||||||||| ||||||||||| |||||||||| |||||||| ||||||    
T  16202376 tagggatgggaataggctaagccgagctaggctttgcaaggcctaagtctggcctgtcaaacttttgtaaggcctaagcctggcttgcggcctatcatag 16202277  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| |||||| |  |||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  16202276 gcttactttttaagcttgaggctgaccttatgaaagcctgattatgccttctagcctgtttaaaag 16202211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 39848794 - 39848619
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||| ||||||| |||||||||  || |||||||||| ||||  ||||||||| | ||||||||||||| ||||||||| |||| |||| ||||||    
T  39848794 tagggatgggaataggctaggccgagcaaggctttgcaaggcctaagcctagcctgtaatatttttgtaaggcctaagcctggtctgcagcctatcatag 39848695  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    |||||  |||||||  ||||| || |||||||||||||||||||||||  |||| || |||||||| || ||||||    
T  39848694 gcttacattttaggcttgagtatggccttatgaaagcctgattaggccagctagactatttaaaagcctatttcat 39848619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 9716565 - 9716399
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    |||||||||| ||||||| ||||||||| ||| |||||||||  |||| | | ||||| || |||||| ||| || |||| ||||||||| |||| ||||    
T  9716565 attagggatgggaataggctaggccgagctaggctttgcaagacctaagtttggcctgccatattttt-taaagcctaagtctggcctgcagcctatcat 9716467  T
Q  173 aggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||| || |||||||| |||||| ||||||| |||||| |||||  ||||| ||||||||||||||||    
T  9716466 aggcctactttttaggcctgagtttgaccttctgaaagtctgatacggcctgctagcctgtttaaaag 9716399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 5880059 - 5880224
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||  ||||||| |||| |||| ||| |||||||||| |||| ||| |||||  | |||||| ||| || |||||||||| |||||||||||||||    
T  5880059 tagggatatgaataggctaggtcgagctaggctttgcaaggcctaagtctggcctgcaatatttttttaaagcataagcctggcatgcggcctgtcatag 5880158  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || ||  |||||||  |||||||| |||| ||||||| ||||   |||| |||| |||||||||||    
T  5880159 gcctacattttaggcttgagtctggccttctgaaagcttgatatagcctgctagactgtttaaaag 5880224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 38556774 - 38556674
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    |||||||||| ||||||| || |||||||||| |||||||||| |||| |||  |||| || |||||| ||| ||||||| |||||||||||||||||||    
T  38556774 attagggatgggaataggctaagccgagttaggctttgcaaggcctaagtctgacctgccatatttttttaaagcttaagtctggcctgcggcctgtcat 38556675  T
Q  173 a 173  Q
    |    
T  38556674 a 38556674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 5712759 - 5712699
Alignment:
Q  127 cctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttag 187  Q
    ||||||||| ||||||||||| |||| ||||||| ||||||||||||  |||| |||||||    
T  5712759 cctgtcaaacttttgtaaggcctaagtctggcctacggcctgtcatacacttactttttag 5712699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 12678048 - 12677937
Alignment:
Q  81 tgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttat 180  Q
    |||||||||| |||||| |||||| |||||||||   ||| || ||||||| |||||||| |||||| |||||||| | | ||| || |||||| |||      
T  12678048 tgagaataggctaggccaagttaggctttgcaagacttaattccagcctgt-aaatttttttaaggcataagcctgacttacggtctatcatagacttgc 12677950  T
Q  181 tttttaggtctga 193  Q
    |||||||||||||    
T  12677949 tttttaggtctga 12677937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 16054796 - 16054931
Alignment:
Q  81 tgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttat 180  Q
    |||||||||| |||||||||||||  ||||||| |||| | |||  | ||| ||||||||  ||||| |||| ||| | |||||  ||||||  | |||     
T  16054796 tgagaataggctaggccgagttaggttttgcaaagtctgagtctgacttgttaaattttttgaaggcctaagtctgacatgcggtttgtcatgtgattac 16054895  T
Q  181 tttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    |||||||||||||| | |||||| ||||||| ||||    
T  16054896 tttttaggtctgagcccgaccttctgaaagcatgat 16054931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 25072509 - 25072673
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||||||||||||||||| || ||| ||| |||||||||| | || |||||||||||||||||||||||||| ||||||||| ||||||| | |||||     
T  25072509 tagggatgagaataggttaagctgaggtaggctttgcaaggccaaagtctagcctgtcaaatttttgtaaggcctaagcctggtctgcggcatatcatat 25072608  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaa 239  Q
    ||||| ||||||||  | |||||||||||||||| | |||||||||||| |||||||||||||||    
T  25072609 gcttactttttaggcttaagtctgaccttatgaaggtctgattaggcctgctagcctgtttaaaa 25072673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 37155837 - 37155693
Alignment:
Q  106 ctttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttat 205  Q
    |||||||||| |||| ||| |||||||||||||||||||||| |||| ||||| ||||| |||||||| | |||||||||| |||||| |||| ||||||    
T  37155837 ctttgcaaggcctaagtctggcctgtcaaatttttgtaaggcctaagtctggcatgcggtctgtcataagtttattttttatgtctgaatctggccttat 37155738  T
Q  206 gaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||||||||| | || ||| |||||||||||| || ||||||    
T  37155737 gaaagcctgattaagtctgctaacctgtttaaaagcctatttcat 37155693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 41016098 - 41015933
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||| || |||||| ||  ||||| |||| || |  ||  |||| ||| |||||  ||||| ||||||||||||||||||||||||||    
T  41016098 tagggatgagaataggctaagccgagctaagctttggaaggcctgagcctgacctgccaacttttttgaaggcctaagcctggcctgcggcctgtcatag 41015999  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| |||||||| ||||||||| ||||||||||| |||||  ||||||||||| ||||||||||    
T  41015998 gcttactttttaggcctgagtctggccttatgaaagtctgatatggcctactagcatgtttaaaag 41015933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 9270969 - 9271135
Alignment:
Q  74 ttagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtc--a 171  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||| |  ||  |||||||||| |||  ||||| ||||||||||||||||||| ||  |    
T  9270969 ttaggggtgagaataggctaggccgagttaggctttgcaaggtctgagcctgacctgtcaaatgttttgaaggcctaagcctggcctgcggcctatcata 9271068  T
Q  172 taggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaa 238  Q
    |||||||| ||||||||  |||||||||||||  |||| ||||||  ||||| ||| ||||||||||    
T  9271069 taggcttactttttaggcttgagtctgaccttccgaaatcctgatacggcctgctaacctgtttaaa 9271135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 5033926 - 5034091
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    |||||||||||||  ||||||||||||||||||| ||| |||| ||| ||||| | ||||||| | |||| |||||||| ||||       ||| |||||    
T  5033926 ggatgagaataggcaaggccgagttagactttgctaggcctaagtctggcctgcctaatttttttgaggcctaagcctgacctg-------tcacaggct 5034018  T
Q  178 tattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    || |||||||| |||||||||||||| ||||||||||||  ||  | || ||||||||||||| || ||||||    
T  5034019 tactttttaggcctgagtctgaccttctgaaagcctgatacggtatgcttgcctgtttaaaagcctatttcat 5034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 32555953 - 32555860
Alignment:
Q  154 ctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgttt 247  Q
    ||||| |||| ||||||||||||||| ||||||||  ||||||||||||| ||||||||||||  || || |||||||||||||||| ||||||    
T  32555953 ctggcatgcgacctgtcataggcttactttttaggcttgagtctgaccttctgaaagcctgatacggtctgctagcctgtttaaaagcctgttt 32555860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 25685120 - 25685292
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    ||||| ||||||| ||||||||| ||| |||  ||||| || | ||| ||||||||| |||||  ||||  ||||  |||| || || ||||||||| ||    
T  25685120 ggatgggaataggctaggccgagctaggcttaacaaggcctgattctggcctgtcaatttttttgaaggtctaagtatggcatgtggtctgtcatagact 25685219  T
Q  178 tattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    || |||||||||||| ||||| |||| ||||||| ||||  | |||||||||||||||||||| || ||||||    
T  25685220 tactttttaggtctgggtctggccttctgaaagcttgatacgacctactagcctgtttaaaagcctatttcat 25685292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 32420186 - 32420342
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgt-aaggcttaagcctggcctgcggcctgtcataggcttattt 182  Q
    ||||||| ||||||||| ||| |||||||||| ||||  || ||||| ||| ||||  | || || || ||||||| |||||||||||||||||||  ||    
T  32420186 gaataggctaggccgagctaggctttgcaaggcctaagcctggcctgccaatttttgatgaatgcataggcctggcttgcggcctgtcataggcttgctt 32420285  T
Q  183 tttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||| || |||||| |||| ||||||||| ||  ||||| ||||||||||||||||    
T  32420286 tttaggcctaagtctggccttctgaaagcct-atacggcctgctagcctgtttaaaag 32420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 29171800 - 29171677
Alignment:
Q  127 cctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctact 226  Q
    |||||||||| ||||||||| |||||| | || ||||   || ||||  |||| ||||||||||||||||||||||||||||||||| |||| | || ||    
T  29171800 cctgtcaaatatttgtaagggttaagcatagcttgcgatatggcataaacttactttttaggtctgagtctgaccttatgaaagcctcattatgtctgct 29171701  T
Q  227 agcctgtttaaaagtctgtttcat 250  Q
    ||  |||||||||| || ||||||    
T  29171700 agtatgtttaaaagcctatttcat 29171677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 42672666 - 42672759
Alignment:
Q  157 gcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||||||||||||||||||| ||||||||  |||| ||| |||| ||||||||||||  ||||| ||| | ||||||||||  ||||||||    
T  42672666 gcctgcggcctgtcataggcttactttttaggcatgagcctggccttctgaaagcctgatacggcctgctaacttgtttaaaagcttgtttcat 42672759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 18331079 - 18330914
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||| |||| ||||| ||||||||| | | |||||||||| |||   |||||||  ||||||||| |||||| ||||||| || |||| |||| |||||    
T  18331079 taggggtgaggataggctaggccgagcttggctttgcaaggcctacgcctagcctaccaaatttttttaaggcctaagcctagcatgcgacctgacatag 18330980  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
     |||| |||||||| |||||  ||  ||| |||||| ||| |  | ||| ||||||||||||||||    
T  18330979 acttactttttaggcctgagcttggtcttctgaaagtctgttacgacctgctagcctgtttaaaag 18330914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 40727432 - 40727310
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||||||  |||||| ||||||||||||| ||||||||||||||| ||| | ||  || |||||  ||| || |  | |||| ||||||||||||||||    
T  40727432 tagggatggaaataggctaggccgagttaggctttgcaaggtctaagtctggtctaccatattttcttaaagcct-ggtctggtctgcggcctgtcatag 40727334  T
Q  175 gcttattttttaggtctgagtctg 198  Q
    || || |||||||||| |||||||    
T  40727333 gcctactttttaggtccgagtctg 40727310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 28032254 - 28032123
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    |||||||  |||||||||||| |||||||| | || | ||| | ||| |||||||||| ||||| || ||||||| |||||||| |||||||||||  ||    
T  28032254 gaataggccaggccgagttaggctttgcaaagcctgagtctggtctgccaaatttttg-aaggcctacgcctggcttgcggcctatcataggcttacatt 28032156  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||  |||||  || | || ||||||||||||    
T  28032155 ttagaactgagcttggcattctgaaagcctgat 28032123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 325218 - 325054
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||||||||||||||||| | |||||||| |||| |||  ||| ||||| ||||||||||||||||| ||  ||| ||||||||||||    
T  325218 tagggatgagaataggttaggccgagttaggccttgcaaggcctaagtctgacctatcaaa-ttttgtaaggcttaagcttgatctgtggcctgtcatag 325120  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| | ||||||  ||||  ||  ||| ||||||||||||||||||||||| | ||||||||||    
T  325119 gcttactctttaggcatgagcatggtcttctgaaagcctgattaggcctactaacatgtttaaaag 325054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 22319799 - 22319964
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||| ||||||||||||  ||||||| ||||||||||||| | | |||  |||||| |||||  ||||| |||| ||||| ||  |||||||||||    
T  22319799 tagggatgggaataggttaggttgagttaggctttgcaaggtctgagtttagtttgtcaatttttttgaaggcctaagtctggcatgttgcctgtcatag 22319898  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| |||||||| |||||||||||||| ||||||||||||  ||||| ||| ||||||||||||    
T  22319899 gcttactttttaggcctgagtctgaccttctgaaagcctgatacggcctgctaacctgtttaaaag 22319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 10183481 - 10183657
Alignment:
Q  74 ttagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcata 173  Q
    |||||||||||||||| |||||||||||||| |||||||||| || |  ||  ||||| ||||||||  ||||| ||||||||||||||| ||| |||||    
T  10183481 ttagggatgagaatagattaggccgagttaggctttgcaaggcctgagcctgacctgttaaattttttgaaggcctaagcctggcctgcgacctttcata 10183580  T
Q  174 ggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    |||||| ||||| || || ||| || |||| ||||| ||||||  ||||| ||||||||||||||| ||| ||||||    
T  10183581 ggcttactttttcggcctaagtttggccttgtgaaaacctgatacggcctgctagcctgtttaaaaatctatttcat 10183657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 22748979 - 22749120
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||  ||  |||| || |||||| ||| |  |||||||||||| |||||||||||||    
T  22748979 tagggatgagaataggttaggccgagctaggctttgcaaggcctaagcctgacctgccatatttttttaaagtctaagcctggcctacggcctgtcatag 22749078  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    || || |||||||| ||||||||| |||| ||||||| ||||    
T  22749079 gcctactttttaggcctgagtctggccttctgaaagcttgat 22749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 7912706 - 7912879
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||| || ||||||| ||||| ||| |||||||||||| | || |  ||  |||| |||||||||  ||||| |||| |||||||||||  ||||||||    
T  7912706 taggggtgggaataggctaggctgagctagactttgcaaagcctgagcctgtcctgccaaattttttgaaggcctaagtctggcctgcggtatgtcatag 7912805  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttc 248  Q
     |||| |||||||||| ||||||| |||| ||||||||||||  | ||||||| ||| ||||||||||| ||||    
T  7912806 acttactttttaggtccgagtctggccttctgaaagcctgatacgacctactaacctatttaaaagtctatttc 7912879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 12154521 - 12154377
Alignment:
Q  106 ctttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttat 205  Q
    |||||||||| ||||| || ||||| ||| ||||| |||| | |||||||  ||||||| |||||||||||||| |||||||| ||||| ||| | || |    
T  12154521 ctttgcaaggcctaaacctggcctgccaattttttttaagacctaagcctaacctgcggtctgtcataggcttactttttaggcctgagcctggcattct 12154422  T
Q  206 gaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
     ||||||||||  ||||| |||||||||||||||| || ||||||    
T  12154421 taaagcctgatacggccttctagcctgtttaaaagcctatttcat 12154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 26659988 - 26660071
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggc 158  Q
    |||||||| ||||||| ||||||||| ||| |||||||||| |||| ||| |||||||||||||||||||||| ||||||||||    
T  26659988 tagggatgggaataggctaggccgagctaggctttgcaaggcctaagtctcgcctgtcaaatttttgtaaggcctaagcctggc 26660071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 55957896 - 55957731
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||  ||||||||| ||| |||||||||| ||||  || ||||| || |||||| ||| ||  ||| |||| |||  ||||||||||     
T  55957896 tagggatgagaatagactaggccgagctaggctttgcaaggcctaagcctggcctgccatatttttttaaagccaaagtctggtctgtagcctgtcataa 55957797  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || || |||||||| ||||| ||| |||| ||||||||||||  | ||| ||||||||||||||||    
T  55957796 gcctactttttaggcctgagcctggccttttgaaagcctgatatgacctgctagcctgtttaaaag 55957731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 11432741 - 11432564
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    ||||||||||  |||||| ||| || || ||  ||||| |||| || || || ||||| ||| |||||  ||||| |||||||||||| || ||||||||    
T  11432741 attagggatggaaataggctagaccaagctaagctttgtaaggcctgaacctggcctgccaatttttttgaaggcctaagcctggcctacgacctgtcat 11432642  T
Q  173 aggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    || |||| |||||||| |||||||||||||| | ||||| ||||  || ||  ||||||||||||||| || ||||||    
T  11432641 agacttactttttaggcctgagtctgaccttttaaaagcttgatatggtctgttagcctgtttaaaagcctatttcat 11432564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 6829229 - 6829146
Alignment:
Q  167 tgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    |||||||| |||| ||||||||||| || ||  |||||||||||||||||||| | | ||||||| ||||||||||| ||||||    
T  6829229 tgtcatagacttactttttaggtcttagcctagccttatgaaagcctgattagacttgctagcctatttaaaagtctatttcat 6829146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 4576912 - 4576795
Alignment:
Q  132 caaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcct 231  Q
    ||||||||| |||||| ||| |||||  || |||||||||||| |||| |||||||| || |||||| |||| | ||||| ||||  ||| | |||||||    
T  4576912 caaatttttttaaggcctaaacctggt-tgtggcctgtcatagacttactttttaggcctaagtctggccttctaaaagcttgatacggcttgctagcct 4576814  T
Q  232 gtttaaaagtctgtttcat 250  Q
    ||||||||| |||||||||    
T  4576813 gtttaaaagcctgtttcat 4576795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 56091997 - 56092099
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttt 184  Q
    |||| ||||| ||||| ||| ||||||||||||||| ||| |||| | || ||||| ||||||||||| ||| ||| |||| ||||||| ||||| ||||    
T  56091997 aataagttagtccgagctaggctttgcaaggtctaagtctggcctctaaattttttttaaggcttaagtctgacctacggcttgtcatatgcttactttt 56092096  T
Q  185 tag 187  Q
    |||    
T  56092097 tag 56092099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 40630154 - 40630053
Alignment:
Q  149 taagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttc 248  Q
    |||| ||||| ||||| |||||||||||||| ||| ||||| | ||||||||||| ||||||| ||||  ||| | ||||||| |||||||| || ||||    
T  40630154 taagtctggcatgcggtctgtcataggcttactttgtaggttttagtctgaccttttgaaagcttgatacggcttgctagcctttttaaaagcctatttc 40630055  T
Q  249 at 250  Q
    ||    
T  40630054 at 40630053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 4435520 - 4435390
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaa-atttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||||||| |||||||| |||||||||||||||   |  ||||||||  ||||| ||||| || ||||||| |||| |||||||| ||||||  |||    
T  4435520 aataggttaggtcgagttaggctttgcaaggtctaaggttgacctgtcaatttttttttaaggttttagcctggtctgcagcctgtcacaggcttgcttt 4435421  T
Q  184 ttaggtctgagtctgaccttatgaaagcctg 214  Q
    |||||  | |||||| | || ||||||||||    
T  4435420 ttaggctttagtctggcgttctgaaagcctg 4435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 6893235 - 6893133
Alignment:
Q  148 ttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgttt 247  Q
    ||||||||||||| || |||||||||  |||| ||||||||  ||| |||| |||| ||||||||||||  || || ||||| |||||||||| || |||    
T  6893235 ttaagcctggcctacgacctgtcatatacttactttttaggcatgaatctggccttctgaaagcctgatacggtctgctagcatgtttaaaagcctattt 6893136  T
Q  248 cat 250  Q
    |||    
T  6893135 cat 6893133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 32519600 - 32519647
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaa 120  Q
    |||||||||| ||||||||||||| ||||||| |||||||||| ||||    
T  32519600 attagggatgggaataggttaggctgagttaggctttgcaaggcctaa 32519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 6829293 - 6829231
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggc 147  Q
    |||||| | ||||||||||| |||||||||| |||| ||| || |||||||||||| ||||||    
T  6829293 aataggctgggccgagttaggctttgcaaggcctaagtctggcttgtcaaatttttttaaggc 6829231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 37666171 - 37666121
Alignment:
Q  166 ctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    |||||||||||||| ||||| |||||||||||||| || |||||| |||||    
T  37666171 ctgtcataggcttactttttcggtctgagtctgacattctgaaagtctgat 37666121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 26660073 - 26660109
Alignment:
Q  202 ttatgaaagcctgattaggcctactagcctgtttaaa 238  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  26660073 ttatgaaagccttattaggcctgctagcctgtttaaa 26660109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 4362078 - 4362196
Alignment:
Q  132 caaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcct 231  Q
    |||||||||  ||||| |||||||| ||||||||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||  |||||||||||||    
T  4362078 caaattttttgaaggcctaagcctgacctgcggcctgtcatagacttactttttaggcttgagtctgaccttctgaaagcctgatacggcctactagcct 4362177  T
Q  232 gtttaaaagtctgtttcat 250  Q
    ||||||||| || ||||||    
T  4362178 gtttaaaagcctatttcat 4362196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 22863081 - 22863238
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||| |||| |||||||| |||||||||| |||| |||  |||||||||||||||||  |  |||||||  | || || |||||||| ||||| |||    
T  22863081 gaataggctaggtcgagttaggctttgcaaggcctaagtctgacctgtcaaatttttgtatagtctaagcctatcatgtggtctgtcataagcttacttt 22863180  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagt 241  Q
    ||||  ||||||||| ||||||||||| |||||||||||| ||||| |||||||||||    
T  22863181 ttagacctgagtctggccttatgaaagtctgattaggcctgctagcttgtttaaaagt 22863238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 16010901 - 16010726
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||| ||||||| ||||||||| ||| ||||| |||| || | ||| ||||| ||| | |||  ||||| |||| ||||  ||||| ||||||||     
T  16010901 tagggatgggaataggctaggccgagctaggctttgtaaggcctgagtctggcctgccaattcttttgaaggcctaagtctggtttgcggtctgtcataa 16010802  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||| |||||||| ||||| ||| |||| ||||||||||||  ||||| ||||||| ||||||||||| ||||||    
T  16010801 gcttactttttaggcctgagcctggccttctgaaagcctgatacggcctgctagcctttttaaaagtctatttcat 16010726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 2758845 - 2759011
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||||||||||||| ||| ||||||||||  | |  || ||||| ||| ||||| |||||| ||| ||||||||| | |||||||||| |||| |||    
T  2758845 gaataggttaggccgagctaggctttgcaagggttgagcctggcctgccaattttttttaaggcctaatcctggcctgtgacctgtcatagacttacttt 2758944  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||||||| ||  |||| | ||||||||||  | | | |||||||||||||||| || ||||||    
T  2758945 ttaggtctgagccttgccttctcaaagcctgatacgacatgctagcctgtttaaaagcctatttcat 2759011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 1826619 - 1826514
Alignment:
Q  138 tttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaa 237  Q
    |||| ||||||| || ||||| | |||||||||||||||||| |||||||| ||||| ||||||||||||||||||  |  ||| | |||||||||||||    
T  1826619 tttgcaaggcttgagtctggcatacggcctgtcataggcttactttttaggcctgagcctgaccttatgaaagcctcgtacggcttgctagcctgtttaa 1826520  T
Q  238 aagtct 243  Q
    ||||||    
T  1826519 aagtct 1826514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 8424654 - 8424571
Alignment:
Q  133 aaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    |||||||| | ||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||| |||| ||||||||||||    
T  8424654 aaatttttttgaggcttaagtctggcctgcggcctgtcatagacttactttttaggcatgagtctgcccttctgaaagcctgat 8424571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 41158313 - 41158143
Alignment:
Q  69 gttgattagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctg 168  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| |||||  || | ||| || ||||||  || || |||| ||| | ||||| |||    
T  41158313 gttgattagggatgggaataggttaggtcgagttagactttgcaagatctaagcctggtctgccatattttt-caaagcctaagtctgacatgcggtctg 41158215  T
Q  169 tcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||||| || |||||||| ||||| |||  ||| ||||||||  ||  |||||  |||||||||||||||    
T  41158214 tcataggcctactttttaggcctgagcctggtcttctgaaagcccaatacggcctgttagcctgtttaaaag 41158143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 45377693 - 45377800
Alignment:
Q  143 aaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtc 242  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||| | |||||| || |||| ||||||||||||  || || |||||||||||||||| |    
T  45377693 aaggcctaagcctggcctgcggcttgtcatagacttactttttaagcctgagtttggccttctgaaagcctgatacggtctgctagcctgtttaaaagcc 45377792  T
Q  243 tgtttcat 250  Q
    | ||||||    
T  45377793 tatttcat 45377800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 45756411 - 45756317
Alignment:
Q  149 taagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtct 243  Q
    |||| ||||||||||||||||||||||| || ||||| ||| |||||| |||||| |||||| |||||  ||||| ||||||| |||||||||||    
T  45756411 taagtctggcctgcggcctgtcataggcatactttttgggtttgagtcggaccttctgaaagtctgatacggcctgctagcctatttaaaagtct 45756317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 4441459 - 4441294
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||| || | |||| ||| |||||||||| ||||  || || || || |||||| ||| || ||||| ||||||||| |||||||||     
T  4441459 tagggatgagaataggctaaggcgagctaggctttgcaaggcctaagcctggcttgccatatttttttaaagcctaagcttggcctgcgacctgtcataa 4441360  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || ||  ||||||| |||||| || |||| |||||| |||||  || || ||||||||||||||||    
T  4441359 gcctaccttttaggcctgagtttggccttctgaaagtctgatacggtctgctagcctgtttaaaag 4441294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 39737127 - 39737292
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||| || ||||| | |||||||||||||| ||||||||  || | ||| ||||  |||||||||  ||||| |||| ||||| ||||||||||||||     
T  39737127 tagggttgggaatacggtaggccgagttagattttgcaagccctgagtctggcctaccaaattttttaaaggcctaagtctggcatgcggcctgtcatat 39737226  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||  |||||||  ||| |||| |||| ||||||||||||  | ||| |||| |||||||||||    
T  39737227 gcttaccttttaggcatgactctggccttctgaaagcctgatacgacctgctagtctgtttaaaag 39737292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 45338908 - 45339072
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||| |||||||||||||  ||||||||| || |  || |||||||||||||||  |||||           ||||||||||||||||    
T  45338908 tagggatgagaataggctaggccgagttaggttttgcaaggcctgagcctggcctgtcaaattttttgaaggc-----------ctgcggcctgtcatag 45338996  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    || || |||||||   |||||||| |||| |||||| |||||  |||||| ||||||||||||||| || ||||||    
T  45338997 gcatactttttagacatgagtctggccttttgaaagtctgatacggcctattagcctgtttaaaagcctatttcat 45339072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 35718252 - 35718366
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    |||| |||||||  ||| ||| |||||| ||  |||| ||| |||||| ||||||||  ||||||||||||||| |||| | |||||||||| |||||||    
T  35718252 gaatgggttaggttgagctaggctttgctagacctaagtctggcctgttaaattttttcaaggcttaagcctggtctgcagtctgtcataggtttatttt 35718351  T
Q  184 ttaggtctgagtctg 198  Q
    ||| | |||||||||    
T  35718352 ttaagcctgagtctg 35718366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 10158229 - 10158136
Alignment:
Q  123 ctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    |||||||| ||||||||| ||| || |||| |||| |||||| |||||| | || || |||||||| ||||||||| |||| ||||||||||||    
T  10158229 ctagcctgccaaatttttttaaagcctaagtctgggctgcggtctgtcacatgcctactttttaggcctgagtctggccttctgaaagcctgat 10158136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 25412574 - 25412410
Alignment:
Q  76 agggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatagg 175  Q
    ||||||||||||||| ||| ||||| ||| |||||||||| ||||  ||  ||| ||| |||||  ||| |||||||  |||| | |||||| ||||| |    
T  25412574 agggatgagaataggctagcccgagctaggctttgcaaggcctaagcctgacctatcatattttcttaaagcttaagtttggcttacggcctatcataag 25412475  T
Q  176 cttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    | ||||| ||||| ||||| ||| |||| |||||||| |||   ||||  |||||||||||||||    
T  25412474 cctatttattaggcctgagcctggccttctgaaagccggatacagcctgttagcctgtttaaaag 25412410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 7799204 - 7799294
Alignment:
Q  149 taagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||| |||| ||||||||||||||||||||| ||||| ||  |||| |||||||| ||||||||||||   || | ||||||||||||||||    
T  7799204 taagactggtctgcggcctgtcataggcttactttttgggcatgagcctgaccttctgaaagcctgatacagc-tgctagcctgtttaaaag 7799294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 30562169 - 30562268
Alignment:
Q  151 agcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    |||||| ||||| || ||||||||||||| |||||||| ||| ||||| |||| |||||| |||||    ||| |||||||||||||||| || ||||||    
T  30562169 agcctgacctgctgcatgtcataggcttactttttaggcctgcgtctggccttctgaaagtctgatacaacctgctagcctgtttaaaagcctatttcat 30562268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 51370089 - 51370210
Alignment:
Q  129 tgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactag 228  Q
    |||||| |||||  |||||||||| ||||| ||||||||||||||||||||     || | |||||  ||||||| |||||| |||||  | ||| ||||    
T  51370089 tgtcaatttttttaaaggcttaagtctggcatgcggcctgtcataggcttacaaagtaagcctgagcttgaccttctgaaagtctgatacgtcctgctag 51370188  T
Q  229 cctgtttaaaagtctgtttcat 250  Q
    |||||| |||||||| ||||||    
T  51370189 cctgttaaaaagtctatttcat 51370210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 17391942 - 17391884
Alignment:
Q  74 ttagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtc 132  Q
    |||||| || ||||| ||||| |||||||||||||||||| |||||| |||||| ||||    
T  17391942 ttaggggtgtgaatatgttagaccgagttagactttgcaatgtctaagtctagcgtgtc 17391884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 642972 - 642835
Alignment:
Q  79 gatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggctt 178  Q
    |||||||||||| |||| ||||||||  |||||||||||||| | | | |||||| ||||||  || | |||| ||| |  || || ||||||||||| |    
T  642972 gatgagaataggataggtcgagttaggttttgcaaggtctaagtttggtctgtcatattttttaaaagtttaaacctagtttgtggtctgtcataggcct 642873  T
Q  179 attttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    | |||||| |  |||||||| |||| |||||| |||||    
T  642872 actttttatgcttgagtctggccttctgaaagtctgat 642835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 3022574 - 3022650
Alignment:
Q  167 tgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtct 243  Q
    |||||||| |||||||||||||||||| |  ||| || | ||||||||||  ||| | ||| |||||||||||||||    
T  3022574 tgtcatagacttattttttaggtctgaattcgacattctaaaagcctgatgtggcatgctaacctgtttaaaagtct 3022650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 35458608 - 35458773
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||| || ||||||| ||||| || |||| |||||||| |  ||| | | | |||||||||||||||||||| |||||||  | ||| ||||||||||     
T  35458608 tagggttgggaataggctaggctgaattaggctttgcaaagcttaagtttggtctgtcaaatttttgtaaggcctaagcctaacatgcagcctgtcataa 35458707  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||||| |||| |||||||||||    
T  35458708 gcttactttttaggtccaagtctggccttatgaaagcctgattaggcctgctagtctgtttaaaag 35458773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 2510372 - 2510474
Alignment:
Q  138 tttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaa 237  Q
    |||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||||||  | ||| |||| ||||||||    
T  2510372 tttgcaaggcctgagcctggcctgcggcctgtcataggcttactttttaggtctgagtctggtcttctgaaggcctgatacgacctgctagtctgtttaa 2510471  T
Q  238 aag 240  Q
    |||    
T  2510472 aag 2510474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 22738423 - 22738587
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||| || ||||| | ||||||||| ||| |||||||||| || | ||| || || ||| |||||  ||||| ||||| ||||||||||||||||||||    
T  22738423 taggggtgggaataagctaggccgagctaggctttgcaaggcctgagtctggcttgccaagttttttgaaggcataagcttggcctgcggcctgtcatag 22738522  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || ||||||||||| |||||| || |||| | |||| |||||  ||||  ||||||||||||||||    
T  22738523 gcatattttttaggcctgagtttggccttct-aaagtctgatacggccagctagcctgtttaaaag 22738587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 30469206 - 30469347
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||||||| |||||||||||  ||||||| ||||| |||| || |  ||  ||   |||||||||  ||||| |||||||| |||| ||||||||||||    
T  30469206 tagggatgaaaataggttaggttgagttaggctttgtaaggcctgagcctgaccgaccaaattttttaaaggcctaagcctgacctgtggcctgtcatag 30469305  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    |||||  ||||||||||||||| |||||| ||||||||||||    
T  30469306 gcttaccttttaggtctgagtcagaccttctgaaagcctgat 30469347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 39629239 - 39629156
Alignment:
Q  129 tgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcct 213  Q
    |||||| ||||| ||||| ||||||||||||||||||||| | |||||||| ||||||||||| |||||| |||| |||||||||    
T  39629239 tgtcaattttttttaagg-ttaagcctggcctgcggcctgacgtaggcttactttttaggtctaagtctggccttctgaaagcct 39629156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 39638789 - 39638706
Alignment:
Q  129 tgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcct 213  Q
    |||||| ||||| ||||| ||||||||||||||||||||| | |||||||| ||||||||||| |||||| |||| |||||||||    
T  39638789 tgtcaattttttttaagg-ttaagcctggcctgcggcctgacgtaggcttactttttaggtctaagtctggccttctgaaagcct 39638706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 18020471 - 18020318
Alignment:
Q  79 gatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggctt 178  Q
    |||| ||||||| |||||| || ||| ||||  |||| |||| ||| | ||||||| |||||  ||||  ||| |||||||||||||||||||||| |||    
T  18020471 gatgggaataggctaggccaagctaggctttttaaggcctaagtctggtctgtcaatttttttgaaggtctaaccctggcctgcggcctgtcatagactt 18020372  T
Q  179 attttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgt 233  Q
    | |||||||| ||||||||   ||| || |||||||||||| ||| |||||||||    
T  18020371 actttttaggcctgagtctagacttctg-aagcctgattagacctgctagcctgt 18020318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 44652708 - 44652643
Alignment:
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| |||||||||||||||||| |||| ||||||||||||  ||||| ||||||||||||||||    
T  44652708 gcttactttttaggtctgagtctggccttctgaaagcctgatacggcctgctagcctgtttaaaag 44652643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 254700 - 254815
Alignment:
Q  97 cgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtc 196  Q
    |||||||| |||||||| |  ||| ||| | ||| ||||||||| |||||| || | |||||| ||||||||| ||| ||||| |||||||||||||| |    
T  254700 cgagttaggctttgcaaagcttaagtctggtctgccaaatttttttaaggcctatgtctggcccgcggcctgttataagcttactttttaggtctgagcc 254799  T
Q  197 tgaccttatgaaagcct 213  Q
    ||||||| |||||||||    
T  254800 tgacctt-tgaaagcct 254815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 661158 - 661043
Alignment:
Q  97 cgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtc 196  Q
    |||||||| |||||||| |  ||| ||| | ||| ||||||||| |||||| || | |||||| ||||||||| ||| ||||| |||||||||||||| |    
T  661158 cgagttaggctttgcaaagcttaagtctggtctgccaaatttttttaaggcctatgtctggcccgcggcctgttataagcttactttttaggtctgagcc 661059  T
Q  197 tgaccttatgaaagcct 213  Q
    ||||||| |||||||||    
T  661058 tgacctt-tgaaagcct 661043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 846956 - 846841
Alignment:
Q  97 cgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtc 196  Q
    |||||||| |||||||| |  ||| ||| | ||| ||||||||| |||||| || | |||||| ||||||||| ||| ||||| |||||||||||||| |    
T  846956 cgagttaggctttgcaaagcttaagtctggtctgccaaatttttttaaggcctatgtctggcccgcggcctgttataagcttactttttaggtctgagcc 846857  T
Q  197 tgaccttatgaaagcct 213  Q
    ||||||| |||||||||    
T  846856 tgacctt-tgaaagcct 846841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 2374166 - 2374246
Alignment:
Q  136 tttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||| ||| || |||||||||| ||| ||||||||||||| || |||||||| ||||| |||||||||||||||| ||||    
T  2374166 tttttttaaagcctaagcctggcatgcagcctgtcataggcctactttttaggcctgagcctgaccttatgaaagcttgat 2374246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 31955984 - 31955871
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    ||||||| ||||||||  ||||||||||||||||||||||||   ||| ||| |  | |||||||||| ||| |||||||||||  |||||| |||||||    
T  31955984 attaggggtgagaatatattaggccgagttagactttgcaagacttaagtct-gattatcaaatttttctaatgcttaagcctgatctgcgggctgtcat 31955886  T
Q  173 aggcttattttttag 187  Q
    | ||||| |||||||    
T  31955885 atgcttactttttag 31955871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 39139167 - 39139309
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgt-aaggcttaagcctggcctgcggcctgtcata 173  Q
    |||||||||||  ||| ||||| ||  ||| |||||||||  |||| ||| ||||| ||| ||| | | ||||| |||||||||| |||| |||||||||    
T  39139167 tagggatgagaccaggctaggctgatctaggctttgcaagacctaagtctggcctgccaattttatttgaaggcctaagcctggcatgcgccctgtcata 39139266  T
Q  174 ggcttattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||||  |||||||||||||| || |||| |||||| |||||    
T  39139267 ggcttacgttttaggtctgagtttggccttctgaaagtctgat 39139309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 17948909 - 17948996
Alignment:
Q  156 ggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtct 243  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||| | |||| ||| |  | ||| |||||||||| ||||||||    
T  17948909 ggcctgcggcctgtcgttagcttaatttttaggtctgagtctgaccttctaaaagtctgttacgacctgctagcctgttgaaaagtct 17948996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 2621647 - 2621521
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||| |||||||||||||  |||| |||| || | | | ||||| ||| |||||  |||||  |||||||  ||||| ||| ||||||||||| |||    
T  2621647 gaataggctaggccgagttaggttttgtaaggcctgagtttggcctgccaatttttttgaaggccaaagcctgatctgcgacctatcataggcttacttt 2621548  T
Q  184 ttaggtctgagtctgaccttatgaaag 210  Q
    ||||| ||||||||| |||| ||||||    
T  2621547 ttagggctgagtctggccttctgaaag 2621521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 17989124 - 17989045
Alignment:
Q  159 ctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||| ||||| || ||||| |||||||| |||||||||  ||| |||||| |||||  ||||||||||||||||||||||    
T  17989124 ctgcggtctgtcgtatgcttactttttaggcctgagtctggtcttctgaaagtctgat--ggcctactagcctgtttaaaag 17989045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 1222537 - 1222452
Alignment:
Q  154 ctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaa 239  Q
    |||||||||||||||||||||||||| ||| ||||  | || |||||||| |||||  |||||  || || |||||||||||||||    
T  1222537 ctggcctgcggcctgtcataggcttactttctaggcttaagcctgaccttctgaaaatctgatacggtctgctagcctgtttaaaa 1222452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 9617228 - 9617297
Alignment:
Q  181 tttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||||||| |||||||| |||| |||||| |||||  ||| ||||| ||||||||||||||| ||||||    
T  9617228 tttttaggtttgagtctggccttctgaaagtctgatacggcatactaacctgtttaaaagtctatttcat 9617297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 40691031 - 40691116
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcct 160  Q
    |||||||| ||||||| ||||||||| ||| |||||||||| || | ||| ||||| ||| |||||  ||||| ||||||||||||    
T  40691031 tagggatgggaataggctaggccgagctaggctttgcaaggcctgagtctggcctgccaatttttttgaaggcctaagcctggcct 40691116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 19973249 - 19973089
Alignment:
Q  81 tgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttat 180  Q
    ||||||||||||||| |||||||  ||||  ||||||||| |||  ||||||||  |||| ||| |  ||||  || | |||||||| ||||| || ||     
T  19973249 tgagaataggttaggtcgagttaagctttagaaggtctaagtctgacctgtcaatcttttttaaagtctaagtttgtcttgcggcctatcatatgcctac 19973150  T
Q  181 tttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagt 241  Q
    |||||||| |||||||| ||||| |||||| |||||  |  || ||||| |||||||||||    
T  19973149 tttttaggcctgagtctaaccttctgaaagtctgatatgatctgctagcatgtttaaaagt 19973089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 21019584 - 21019744
Alignment:
Q  81 tgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttat 180  Q
    ||||||||||||||| |||||||  ||||  ||||||||| |||  ||||||||  |||| ||| |  ||||  || | |||||||| ||||| || ||     
T  21019584 tgagaataggttaggtcgagttaagctttagaaggtctaagtctgacctgtcaatcttttttaaagtctaagtttgtcttgcggcctatcatatgcctac 21019683  T
Q  181 tttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagt 241  Q
    |||||||| |||||||| ||||| |||||| |||||  |  || ||||| |||||||||||    
T  21019684 tttttaggcctgagtctaaccttctgaaagtctgatatgatctgctagcatgtttaaaagt 21019744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 17948841 - 17948906
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaattttt 140  Q
    ||||| || |||||| |||||||||| |||||||||||||| |||| ||| |||||  ||||||||    
T  17948841 taggggtgggaatagcttaggccgagctagactttgcaaggcctaagtctggcctgctaaattttt 17948906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 31588205 - 31588088
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    ||||||||  |||||| |||||  |||||| |||||||||| || |  || |||||| || ||||| |||||   ||| |||| |||||||||||||||     
T  31588205 tagggatggaaataggctaggctaagttaggctttgcaaggcctgagcctggcctgttaattttttttaaggtcaaagtctggtctgcggcctgtcataa 31588106  T
Q  175 gcttattttttaggtctg 192  Q
    ||||| ||||| ||||||    
T  31588105 gcttactttttgggtctg 31588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 10710390 - 10710258
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||| || ||||| |||| ||||||||||  | |  || ||||| || ||||||  ||||  ||||| ||||||||  ||||||||||  ||| |||    
T  10710390 gaataggctatgccgatttaggctttgcaaggcatgagcctggcctgccatattttttgaaggtctaagcttggcctgcaacctgtcatagatttacttt 10710291  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgat 216  Q
    ||||| ||||| || ||||| ||||||||||||    
T  10710290 ttaggcctgagccttaccttttgaaagcctgat 10710258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 35223551 - 35223650
Alignment:
Q  139 ttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaa 238  Q
    ||||||||| ||||| || | |||||| | |||||||||||| ||||| |||||||| | ||||| | |||| |||||  ||||| ||||| ||||||||    
T  35223551 ttgtaaggcctaagcttgccttgcggc-tatcataggcttatcttttaagtctgagttttaccttttaaaagtctgatatggcctgctagcgtgtttaaa 35223649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 22859903 - 22859792
Alignment:
Q  128 ctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctacta 227  Q
    |||||||||||||||||||| |||| | |  |||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||| |||    
T  22859903 ctgtcaaatttttgtaaggcctaaggccgatctgcggcctgtcatagacttactttttaggtctgagtctggccttatgagagcctgattaggcctgcta 22859804  T
Q  228 gcctgtttaaaa 239  Q
    || | |||||||    
T  22859803 gcatttttaaaa 22859792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 19298353 - 19298198
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttt 184  Q
    |||||| |||||||||||||  ||||||| || | ||||| || |||||| |||||  ||||||||||||||  ||| || |||| ||||||||||||||    
T  19298353 aataggctaggccgagttaggttttgcaaagtttgaatctggcatgtcaatttttttgaaggcttaagcctgatctggggtctgtgataggcttattttt 19298254  T
Q  185 taggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||  | ||||||||||| |||||| |||||  | | | ||||||||||||||||    
T  19298253 taggcttaagtctgaccttctgaaagtctgatacgtcttgctagcctgtttaaaag 19298198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 40514612 - 40514755
Alignment:
Q  97 cgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtc 196  Q
    |||||||||||||||||||||| | ||||| |||||||||||||  ||||| ||| ||||  || |||| |||||||  ||||  ||||||||||||| |    
T  40514612 cgagttagactttgcaaggtctgagtctagtctgtcaaattttttgaaggcctaaacctgatctacggcttgtcatatacttacattttaggtctgagcc 40514711  T
Q  197 tgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||||| |||||| |||||  || || |||| |||||||||||    
T  40514712 tgaccttctgaaagtctgatatggtctgctagtctgtttaaaag 40514755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 40202120 - 40201954
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||| |||| |||| ||| |||||||||| || | |||  |||  || ||||||  |||| |||||| |||||||||||||||||||| |||| |||    
T  40202120 gaataggataggtcgagctaggctttgcaaggcctgagtctgccctaccatattttttgaaggtttaagcttggcctgcggcctgtcatagacttacttt 40202021  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    ||||| ||||||||| |||| |||||| |||||  ||  | |||| |||||||||||||| ||||||    
T  40202020 ttaggcctgagtctggccttctgaaagtctgatacggtatgctagtctgtttaaaagtctatttcat 40201954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 35319210 - 35319295
Alignment:
Q  164 gcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttca 249  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||| |||||  ||||| |||||||||||||||| ||| ||||    
T  35319210 gcctgtcataggcttactttttaggcctgagtctgaccttttgaaagtctgatacggcctgctagcctgtttaaaagcctgcttca 35319295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 36439747 - 36439903
Alignment:
Q  84 gaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttatttt 183  Q
    ||||||||||||||||||||| |||||||||| || |  ||   ||||||||||||   ||||  |||| |||| |||||| ||||||||  |||| |||    
T  36439747 gaataggttaggccgagttaggctttgcaaggcctgagcctgatctgtcaaattttatgaaggactaagtctggtctgcggtctgtcataaacttacttt 36439846  T
Q  184 ttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||||||||||| ||||| ||||||  ||||  || || ||||||||||||||||    
T  36439847 ttaggtctgagtctaaccttctgaaagtttgatacggtctgctagcctgtttaaaag 36439903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 28207540 - 28207446
Alignment:
Q  149 taagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtct 243  Q
    ||||||||| |||||||||||||||||| || |||||||| |||||  ||||||| |||||||| |||  | ||| |||||||||||||||||||    
T  28207540 taagcctggtctgcggcctgtcataggcctactttttaggcctgagcttgaccttctgaaagccagatacgacctgctagcctgtttaaaagtct 28207446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 29570900 - 29571038
Alignment:
Q  78 ggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggct 177  Q
    ||||||||||||| ||||  ||| ||| ||||||||||  | | |||   |||||||||||||  |||||||||| ||||||| ||| ||||||||| ||    
T  29570900 ggatgagaataggctaggttgaggtaggctttgcaaggcttgagtctgatctgtcaaattttttgaaggcttaagtctggcctacggtctgtcatagact 29570999  T
Q  178 tattttttaggtctgagtctgaccttatgaaagcctgat 216  Q
    || |||||||| ||||  |||||||| ||||||||||||    
T  29571000 tactttttaggcctgaacctgaccttctgaaagcctgat 29571038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 10918201 - 10918313
Alignment:
Q  138 tttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaa 237  Q
    |||| ||||| |||| ||||| |||||| ||||||||  ||| |||||||   |||| ||||||||||||||| |||||||||||| ||||| |||||||    
T  10918201 tttgcaaggcctaagtctggcatgcggcttgtcatagatttactttttagacatgagcctgaccttatgaaagtctgattaggcctgctagcttgtttaa 10918300  T
Q  238 aagtctgtttcat 250  Q
    |||| | ||||||    
T  10918301 aagtttatttcat 10918313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 40417642 - 40417468
Alignment:
Q  76 agggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatagg 175  Q
    ||||||| || |||||||||||||| |||  ||||||||| ||||  ||  |||||||||||||| | || | |||| ||| | || ||||| |||||||    
T  40417642 agggatgggagtaggttaggccgagctaggttttgcaaggcctaagcctgacctgtcaaatttttttgagccctaagtctgacttgtggcctttcatagg 40417543  T
Q  176 cttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
     ||| ||||||||  ||| |||||| || ||||||||||||  || || ||| |||||||||||| || ||||||    
T  40417542 tttactttttaggcatgaatctgacattctgaaagcctgatacggtctgctaacctgtttaaaagcctatttcat 40417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 16885333 - 16885441
Alignment:
Q  135 atttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtt 234  Q
    |||||| ||| || |||| ||||| |||||||||||||| || || |||||| |  |||||||| |||| ||||||||||||  ||||| | ||||||||    
T  16885333 atttttttaaagcctaagtctggcttgcggcctgtcatatgcctactttttatgcatgagtctggccttctgaaagcctgatacggcctgcgagcctgtt 16885432  T
Q  235 taaaagtct 243  Q
    |||||||||    
T  16885433 taaaagtct 16885441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 39981442 - 39981617
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||| || |||| |||| |||||||| |||||||||| |||| ||    ||||||||||||| | || | |||||||| | ||  |||| |||||     
T  39981442 tagggatgggagtaggctaggtcgagttaggctttgcaaggcctaagtccgatctgtcaaatttttttgagccctaagcctgacttgtagcctctcataa 39981541  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    | ||| ||||||||  |||||||| | || ||||||||||||  ||||| ||| |||||||||||| || ||||||    
T  39981542 gtttactttttaggcatgagtctggcattctgaaagcctgatacggcctgctaacctgtttaaaagcctatttcat 39981617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 12580338 - 12580246
Alignment:
Q  148 ttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| ||||| ||||| ||||||||||| || |||||| |||||||  ||||||| |||||| |||||   | |||||||||||| ||||||    
T  12580338 ttaagtctggcatgcggtctgtcataggcctactttttaagtctgagcatgaccttctgaaagtctgatacagtctactagcctgtctaaaag 12580246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 15529906 - 15530075
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggc----ttaagcctggcctgcggcctgtc 170  Q
    |||||||||||||||| ||||| ||| ||| |||||||||| |||| ||| | ||| ||  ||| | ||| ||    ||||| ||||| |||||| ||||    
T  15529906 tagggatgagaataggctaggctgagctaggctttgcaaggcctaagtctggtctgccatctttatttaaagcctaattaagtctggcatgcggcttgtc 15530005  T
Q  171 ataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    |||||| || |||||||| |||||  || ||||  ||||| |||||  || || ||||||||||||||||    
T  15530006 ataggcctactttttaggcctgagcttggccttccgaaagtctgatacggtctgctagcctgtttaaaag 15530075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 5331491 - 5331337
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttt 184  Q
    |||||| ||||||||| |||||||||||||| ||||  || | ||| ||||||||| ||| || ||| |||||||||||||||||||||| | || ||||    
T  5331491 aataggctaggccgagatagactttgcaaggcctaagcctggtctgccaaatttttttaaagcctaaacctggcctgcggcctgtcatagacctactttt 5331392  T
Q  185 taggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaa 239  Q
     ||| ||||||||| |||| ||||||| ||||  ||||| ||| |||||||||||    
T  5331391 aaggcctgagtctggccttctgaaagcttgatacggcctgctaacctgtttaaaa 5331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 5167035 - 5167200
Alignment:
Q  75 tagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcatag 174  Q
    |||||||||||||||||||||| ||| ||   ||| ||||| ||||||||   |||  | |||||| ||| | ||||| |||| |||||| || ||||||    
T  5167035 tagggatgagaataggttaggcagagctaagatttacaaggactaaatctgatctgctatatttttttaaagtttaagtctggtctgcggtctatcatag 5167134  T
Q  175 gcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
     |||| |||||||| |||||| ||  ||| ||||||||||||  |||||||||| |||||||||||    
T  5167135 acttactttttaggcctgagtttggtcttctgaaagcctgatacggcctactagtctgtttaaaag 5167200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 10667454 - 10667561
Alignment:
Q  143 aaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtc 242  Q
    ||||| |||| ||||| ||||| || ||||| ||||| ||||||||| |||||||| |||| |||||||||| |  ||||| |||| ||||||||||| |    
T  10667454 aaggcctaagtctggcttgcggtctatcatatgcttaatttttaggtatgagtctggccttctgaaagcctgctacggcctgctagtctgtttaaaagcc 10667553  T
Q  243 tgtttcat 250  Q
    | ||||||    
T  10667554 tatttcat 10667561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 24556911 - 24556748
Alignment:
Q  73 attagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcat 172  Q
    |||||||||| ||||||| |||| |||| ||| |||| ||||||||||  || ||||| || || ||| ||| || |    |||||||||||||||||||    
T  24556911 attagggatgggaataggctaggtcgagctaggctttacaaggtctaagcctggcctgccatatatttttaatgcct----ctggcctgcggcctgtcat 24556816  T
Q  173 aggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    || | || |||||| |  | || |||||||| || |||||||||  ||||| ||||||||||||||||    
T  24556815 agacctactttttaagctttagcctgaccttctgtaagcctgatacggcctgctagcctgtttaaaag 24556748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 24073783 - 24073686
Alignment:
Q  143 aaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaag 240  Q
    ||||| |||||||||||| ||||||||||| |||| |  ||||||| ||||||||| ||||  |||| ||||||  | ||| ||||||||| ||||||    
T  24073783 aaggcctaagcctggcctacggcctgtcattggctcaccttttaggcctgagtctggccttcggaaaacctgatacgacctgctagcctgtctaaaag 24073686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 7191 - 7274
Alignment:
Q  167 tgtcataggcttattttttaggtctgagtctgaccttatgaaagcctgattaggcctactagcctgtttaaaagtctgtttcat 250  Q
    |||||||| |||| ||||||||||| || ||  |||||||||||||||||||| | | ||||||| ||||||||||| ||||||    
T  7191 tgtcatagacttactttttaggtcttagcctagccttatgaaagcctgattagacttgctagcctatttaaaagtctatttcat 7274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7127 - 7189
Alignment:
Q  85 aataggttaggccgagttagactttgcaaggtctaaatctagcctgtcaaatttttgtaaggc 147  Q
    |||||| | ||||||||||| |||||||||| |||| ||| || |||||||||||| ||||||    
T  7127 aataggctgggccgagttaggctttgcaaggcctaagtctggcttgtcaaatttttttaaggc 7189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 88 - 30
Alignment:
Q  74 ttagggatgagaataggttaggccgagttagactttgcaaggtctaaatctagcctgtc 132  Q
    |||||| || ||||| ||||| |||||||||||||||||| |||||| |||||| ||||    
T  88 ttaggggtgtgaatatgttagaccgagttagactttgcaatgtctaagtctagcgtgtc 30  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 11203 - 11126
Alignment:
Q  126 gcctgtcaaatttttgtaaggcttaagcctggcctgcggcctgtcataggcttattttttaggtctgagtctgacctt 203  Q
    ||||| |||||||||  ||||| |||| ||||||| |||||| |||||||||||  ||||||   |||||||||||||    
T  11203 gcctgccaaattttttaaaggcctaagtctggccttcggcctatcataggcttacgttttagacttgagtctgacctt 11126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University