View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_high_42 (Length: 248)

Name: NF18444_high_42
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_high_42
NF18444_high_42
[»] chr2 (3 HSPs)
chr2 (1-239)||(26511043-26511278)
chr2 (9-114)||(14815400-14815504)
chr2 (50-163)||(4733015-4733128)
[»] chr5 (7 HSPs)
chr5 (6-163)||(19828024-19828181)
chr5 (6-163)||(8588935-8589093)
chr5 (6-79)||(38226126-38226199)
chr5 (6-80)||(8590271-8590345)
chr5 (46-111)||(6037274-6037339)
chr5 (6-67)||(19831805-19831866)
chr5 (6-79)||(35891866-35891939)
[»] chr6 (4 HSPs)
chr6 (30-131)||(16118517-16118618)
chr6 (1-79)||(10457921-10457999)
chr6 (6-114)||(32056490-32056595)
chr6 (5-121)||(32054913-32055030)
[»] chr1 (4 HSPs)
chr1 (44-196)||(12658994-12659144)
chr1 (6-163)||(12657917-12658073)
chr1 (30-92)||(6396183-6396245)
chr1 (6-52)||(12664148-12664194)
[»] chr4 (3 HSPs)
chr4 (6-122)||(32838941-32839056)
chr4 (36-121)||(41982602-41982687)
chr4 (29-70)||(30783563-30783604)
[»] chr8 (4 HSPs)
chr8 (20-181)||(33136897-33137059)
chr8 (6-162)||(8085517-8085673)
chr8 (47-121)||(33137503-33137577)
chr8 (6-70)||(7000762-7000826)
[»] chr7 (4 HSPs)
chr7 (83-176)||(9024986-9025080)
chr7 (29-182)||(30332450-30332603)
chr7 (31-73)||(47304117-47304159)
chr7 (14-122)||(5987699-5987808)
[»] chr3 (3 HSPs)
chr3 (8-67)||(1723240-1723299)
chr3 (31-159)||(53114193-53114322)
chr3 (6-71)||(27647895-27647960)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26511043 - 26511278
Alignment:
Q  1 cctatattatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgc 100  Q
    |||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  26511043 cctaaattatttatcttaattattaaactgatccttgatgctgtcaaataaatactaaaaactaaaagaacatatttaactattatttattacattctgc 26511142  T
Q  101 atgtttgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgttcaaaccacttcaaattatcatctgttttctacaccca 200  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  26511143 atgtttgaaatgaaacttcatctatgttgaatgtagtctccaaggtcttcatgcaaaagtgttgaaaccacttcaaatt---atctgttttctacaccca 26511239  T
Q  201 aaagcattttgcatatattttgcacccaagatgatgatg 239  Q
     ||||||||||||||| ||||||||||||||||||||||    
T  26511240 caagcattttgcatattttttgcacccaagatgatgatg 26511278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 14815400 - 14815504
Alignment:
Q  9 atttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttga 108  Q
    |||||||| | |||| ||||| |||||||||| |||||||||||| |||||| |||||| |||| ||| |||   ||||||||||  | |||||||||||    
T  14815400 atttatctcaactatcaaactaatccttgataatgtcaaataaatgctaaaagctaaaa-aatgaattaaactgatatttattaccatttgcatgtttga 14815498  T
Q  109 aatgaa 114  Q
    ||||||    
T  14815499 aatgaa 14815504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 4733128 - 4733015
Alignment:
Q  50 aaatactaaaaactaaaagaatgtattt-aaccattatttattacattctgcatgtttgaaatgaagcttcatctatgttgaatgtagttttcaaggtct 148  Q
    ||||| ||||| |||||||||||| ||| |||  ||||||||||  || ||||||||| |||||||| | |||| |||||||   |||| | ||||||||    
T  4733128 aaatattaaaagctaaaagaatgtgttttaactgttatttattatcttttgcatgttt-aaatgaagttacatccatgttgagcttagtctccaaggtct 4733030  T
Q  149 tcatgcaaaagtgtt 163  Q
    || ||||||||||||    
T  4733029 tcgtgcaaaagtgtt 4733015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 19828024 - 19828181
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtt 105  Q
    ||||||||||||  |||| |||||||||| ||||  ||| || ||||| ||||||||||||||||||| |||||| |||||||||||  || ||||| ||    
T  19828024 attatttatcttgactataaaactgatccatgatgttgttaagtaaatgctaaaaactaaaagaatgtgtttaactattatttattatcttttgcatatt 19828123  T
Q  106 tgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgtt 163  Q
    |||||||||| |||||| ||||||||  |||  |||||| | |||||| |||||||||    
T  19828124 tgaaatgaagattcatcgatgttgaacctagccttcaagattttcatggaaaagtgtt 19828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 8588935 - 8589093
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaa--ccattatttattacattctgcatg 103  Q
    |||||| |||||| |||| ||| |||||||||||| | |||||||||| |||||| || ||||||||| |||||  |  | |||||||||||| | ||||    
T  8588935 attattcatcttaactatcaaattgatccttgatagtatcaaataaattctaaaatctgaaagaatgtgtttaactctctaatttattacatt-ttcatg 8589033  T
Q  104 tttgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgtt 163  Q
    ||| |||||||| |||||| ||||| |||||||  | ||| |||||||||||||||||||    
T  8589034 tttaaaatgaagtttcatccatgttcaatgtagcctccaaagtcttcatgcaaaagtgtt 8589093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 38226199 - 38226126
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaa 79  Q
    ||||||||||||| |||| || ||||||||||||||| ||||||||||  |||||| ||||| |||||||||||    
T  38226199 attatttatcttatctatcaatctgatccttgatactatcaaataaatgttaaaaattaaaataatgtatttaa 38226126  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 8590345 - 8590271
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaac 80  Q
    ||||||||||||| |||||||| |||||  || |||| |||||||||| ||||||| | ||||||||| ||||||    
T  8590345 attatttatcttaactattaaattgatcaatggtactatcaaataaatgctaaaaaatgaaagaatgtgtttaac 8590271  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 6037274 - 6037339
Alignment:
Q  46 aaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaat 111  Q
    |||||||| ||||||||||||||||| |||||  | |||||||||||| || ||||||||| ||||    
T  6037274 aaataaatgctaaaaactaaaagaatatatttgcctattatttattaccttttgcatgtttaaaat 6037339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 19831866 - 19831805
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaa 67  Q
    ||||||||||||| | || |||||||||  ||||| |||||||||||| |||||||||||||    
T  19831866 attatttatcttaacgatcaaactgatctctgatattgtcaaataaatgctaaaaactaaaa 19831805  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 35891939 - 35891866
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaa 79  Q
    ||||||||||||| | || || ||||||  |||| || ||||||||||| |||||||||||||||||| |||||    
T  35891939 attatttatcttatcaatcaatctgatctctgatgctatcaaataaatattaaaaactaaaagaatgtgtttaa 35891866  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 16118618 - 16118517
Alignment:
Q  30 gatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttcatctatgttg 129  Q
    ||||||||||||||||||||||||   ||||||||||||||| | ||||||||||||||||||| || | ||||||| |||||||| |||||  ||||||    
T  16118618 gatccttgatactgtcaaataaatgtcaaaaactaaaagaatatgtttaaccattatttattaccttttccatgtttaaaatgaagtttcattcatgttg 16118519  T
Q  130 aa 131  Q
    ||    
T  16118518 aa 16118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10457999 - 10457921
Alignment:
Q  1 cctatattatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaa 79  Q
    |||| ||||||||||||| |||||||  |||||  ||| ||||||||||||||  |||||||||||||||||| |||||    
T  10457999 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaatgttaaaaactaaaagaatgtgtttaa 10457921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 32056595 - 32056490
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtt 105  Q
    ||||||||||||| |||| ||| |||||  |||||||  ||||||||| ||||||||||||||||||| ||||||  ||| | ||||| || |||||| |    
T  32056595 attatttatcttaactatcaaattgatctctgatact--caaataaatgctaaaaactaaaagaatgtgtttaactctta-tcattaccttttgcatggt 32056499  T
Q  106 tgaaatgaa 114  Q
    |||||||||    
T  32056498 tgaaatgaa 32056490  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 32054913 - 32055030
Alignment:
Q  5 tattatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaa-agaatgtatttaaccattatttatta-cattctgcat 102  Q
    |||||||||| ||| |||| |||||||||  ||||| |||||||||||| | |||||  ||| | ||||| ||||||  |||||||||| |||| |||||    
T  32054913 tattatttatgttaactatcaaactgatctatgatattgtcaaataaatgcgaaaaataaaataaaatgtgtttaactgttatttattatcatt-tgcat 32055011  T
Q  103 gtttgaaatgaagcttcat 121  Q
    |||||| |||||| |||||    
T  32055012 gtttgagatgaagtttcat 32055030  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 12659144 - 12658994
Alignment:
Q  44 tcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttcatctatgttgaatgtagttttcaa 143  Q
    |||||||||| ||||||||| ||||||||| ||||||  |||||||||||||| | |||||||||||||||  |||||| ||||| || |||   |  ||    
T  12659144 tcaaataaatgctaaaaactgaaagaatgtgtttaact-ttatttattacatttt-catgtttgaaatgaaatttcatccatgttcaacgtatcctcgaa 12659047  T
Q  144 ggtcttcatgcaaaagtgtt-caaaccacttcaaattatcatctgttttctaca 196  Q
    ||||||||||||||||||||  ||||||||||||||| || | |||||||||||    
T  12659046 ggtcttcatgcaaaagtgttgaaaaccacttcaaattctc-tttgttttctaca 12658994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 12657917 - 12658073
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtt 105  Q
    ||||||||||||| |||| ||| |||||| ||| || ||||||||||| ||||||| | ||||||||| |||||  || ||| |||||||| | || |||    
T  12657917 attatttatcttaactatcaaattgatccctgaaacagtcaaataaatcctaaaaaatgaaagaatgtgtttaaatataattaattacatt-ttcaagtt 12658015  T
Q  106 tgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgtt 163  Q
    |||||||||| |||||| || || ||| ||   || |||||||||||| |||||||||    
T  12658016 tgaaatgaagtttcatccatattcaatatatccttaaaggtcttcatgtaaaagtgtt 12658073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 6396245 - 6396183
Alignment:
Q  30 gatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttatta 92  Q
    ||||| |||||  ||||||||||| ||||||| ||||||||||| |||||| |||||||||||    
T  6396245 gatccctgatatagtcaaataaatgctaaaaaataaaagaatgtgtttaactattatttatta 6396183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 12664148 - 12664194
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaa 52  Q
    ||||||||||||| |||| ||| |||| |||||||||||||||||||    
T  12664148 attatttatcttaactatcaaattgattcttgatactgtcaaataaa 12664194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 32839056 - 32838941
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtt 105  Q
    ||||||||||||| |||| ||| |||||| |||||| ||||||||||| ||||||| | ||||||||| ||||||| | ||||||| |||| | ||||||    
T  32839056 attatttatcttaactatcaaattgatccatgataccgtcaaataaatgctaaaaattgaaagaatgtgtttaaccgtaatttattgcatt-ttcatgtt 32838958  T
Q  106 tgaaatgaagcttcatc 122  Q
     ||||||||| ||||||    
T  32838957 agaaatgaagtttcatc 32838941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 41982687 - 41982602
Alignment:
Q  36 tgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttcat 121  Q
    |||||||||||||||||| ||||||||||||||||  | ||||||  ||||||||||| || | |||||||||||| ||| |||||    
T  41982687 tgatactgtcaaataaatgctaaaaactaaaagaacatgtttaactgttatttattaccttttacatgtttgaaattaagtttcat 41982602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 30783563 - 30783604
Alignment:
Q  29 tgatccttgatactgtcaaataaatactaaaaactaaaagaa 70  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  30783563 tgatccatgatactgtcaaataaatgttaaaaactaaaagaa 30783604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 33136897 - 33137059
Alignment:
Q  20 ctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttc 119  Q
    |||| |||||||||  |||||||  ||||||||| ||||||| ||||| ||| | ||||||  ||||||||||| || ||||| |||||||||||| |||    
T  33136897 ctatcaaactgatctctgatactcgcaaataaatgctaaaaattaaaataatatgtttaacggttatttattaccttttgcatatttgaaatgaagtttc 33136996  T
Q  120 atctatgttgaatgtagttttcaaggtcttcatgcaaaagtgtt-caaaccacttcaaattat 181  Q
    ||| |||||||| ||||  |  |||||| ||| |||| ||||||  |||||| ||||||||||    
T  33136997 atccatgttgaacgtagcatcaaaggtcgtcaggcaacagtgttgaaaaccaattcaaattat 33137059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 8085517 - 8085673
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtt 105  Q
    ||||||||||||| ||||  |||||||   ||||| |||||||||||| ||||||||  ||| ||||| |||||| |||||||| ||  || || |||||    
T  8085517 attatttatcttaactatcgaactgatatctgatattgtcaaataaatgctaaaaacctaaaaaatgtgtttaactattatttactatcttttggatgtt 8085616  T
Q  106 tgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgt 162  Q
    |||||| | | |||||  ||| | |||||||  | ||| ||||||||||||||||||    
T  8085617 tgaaataatgtttcattcatgcttaatgtagcgtccaatgtcttcatgcaaaagtgt 8085673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 33137577 - 33137503
Alignment:
Q  47 aataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttcat 121  Q
    ||||||||||||||||||||| || || |||||   ||||||||||| || || |||||||| |||||| |||||    
T  33137577 aataaatactaaaaactaaaaaaacgtgtttaattgttatttattaccttttgaatgtttgacatgaagtttcat 33137503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 7000762 - 7000826
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaa 70  Q
    |||||||||| || |||| ||  |||||  |||||| ||||||||||| ||||||||||||||||    
T  7000762 attatttatcatatctatcaatttgatctctgataccgtcaaataaatgctaaaaactaaaagaa 7000826  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 9025080 - 9024986
Alignment:
Q  83 ttatttattacattctgcatgtttgaaatgaagcttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgtt-caaaccacttcaa 176  Q
    ||||||||||| || |||||||||||||||||| |||||| || || || ||||| | |||||| ||||||||||||||||  ||||||||||||    
T  9025080 ttatttattactttttgcatgtttgaaatgaagtttcatccatcttcaacgtagtctccaaggtgttcatgcaaaagtgttgaaaaccacttcaa 9024986  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 30332450 - 30332603
Alignment:
Q  29 tgatccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccattatttattacattctgcatgtttgaaatgaagcttcatctatgtt 128  Q
    ||||| |||||||||||||||||||  |||||||| ||||||||| |||||   |||||| ||| ||| ||| ||||| |||| ||| |||||| | |||    
T  30332450 tgatcattgatactgtcaaataaatgttaaaaactgaaagaatgtgtttaaatgttatttgttaaattttgcgtgtttcaaataaagtttcatccaagtt 30332549  T
Q  129 gaatgtagttttcaaggtcttcatgcaaaagtgtt-caaaccacttcaaattatc 182  Q
      | ||| | | ||| |||||||| ||||| ||||  ||||||||||||||||||    
T  30332550 agacgtaatgtccaa-gtcttcatacaaaaatgttgaaaaccacttcaaattatc 30332603  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 47304159 - 47304117
Alignment:
Q  31 atccttgatactgtcaaataaatactaaaaactaaaagaatgt 73  Q
    ||||||||||| |||||||| || |||||||||||||||||||    
T  47304159 atccttgataccgtcaaatatatcctaaaaactaaaagaatgt 47304117  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 5987808 - 5987699
Alignment:
Q  14 tcttagctattaaactgatccttgatactgtcaaataaatactaaaaact-aaaagaatgtatttaaccattatttattacattctgcatgtttgaaatg 112  Q
    ||||| |||| |||||||| |||||| ||  ||||||||| ||||| | | |||| ||||| ||| ||  ||||||||||| || ||||||||||||| |    
T  5987808 tcttaactatcaaactgattcttgatgctaccaaataaatgctaaacatttaaaaaaatgtgtttgactgttatttattaccttttgcatgtttgaaacg 5987709  T
Q  113 aagcttcatc 122  Q
    ||| ||||||    
T  5987708 aagtttcatc 5987699  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 1723240 - 1723299
Alignment:
Q  8 tatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaa 67  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  1723240 tatttatcttatatatcaaattgatccttgatactgtcaaataaatgctaaaaactaaaa 1723299  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 53114322 - 53114193
Alignment:
Q  31 atccttgatactgtcaaataaatactaaaaactaaaagaatgtatttaaccatt-atttattacattctgcatgtttgaaatgaagcttcatctatgttg 129  Q
    |||| ||||| |||| | ||||| |||||||||||||||| || ||||||  || |||||||||  | |||||||||||||||||  |||||| ||||||    
T  53114322 atccctgatattgtctattaaatgctaaaaactaaaagaacgtgtttaactgtttatttattaccatttgcatgtttgaaatgaattttcatcgatgttg 53114223  T
Q  130 aatgtagttttcaaggtcttcatgcaaaag 159  Q
    || ||||| |  || ||||||||| |||||    
T  53114222 aacgtagtctcaaaagtcttcatgtaaaag 53114193  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 27647960 - 27647895
Alignment:
Q  6 attatttatcttagctattaaactgatccttgatactgtcaaataaatactaaaaactaaaagaat 71  Q
    ||||||||||||| |||| ||| |||| ||| ||| |||||||||||| |||||||  ||||||||    
T  27647960 attatttatcttaactatcaaattgatacttaatattgtcaaataaatgctaaaaataaaaagaat 27647895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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