View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_high_43 (Length: 238)

Name: NF18444_high_43
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_high_43
NF18444_high_43
[»] chr2 (1 HSPs)
chr2 (1-231)||(20040041-20040267)
[»] chr5 (2 HSPs)
chr5 (137-225)||(39087406-39087496)
chr5 (5-89)||(39087291-39087377)
[»] chr8 (2 HSPs)
chr8 (142-222)||(38544236-38544318)
chr8 (157-226)||(2320142-2320211)
[»] chr6 (1 HSPs)
chr6 (142-226)||(18246229-18246315)
[»] chr4 (1 HSPs)
chr4 (142-226)||(16990509-16990595)
[»] chr3 (4 HSPs)
chr3 (142-226)||(37242005-37242091)
chr3 (142-226)||(1258717-1258803)
chr3 (186-226)||(13809979-13810019)
chr3 (157-215)||(34873626-34873684)
[»] chr7 (1 HSPs)
chr7 (142-226)||(31234168-31234254)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20040041 - 20040267
Alignment:
Q  1 aaaatgaatgttgaccctttgataattttttcttccatgaaatgggtgtgaggttgaagataatatttgaattaataatgagtttgtagctgtacaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20040041 aaaatgaatgttgaccctttgataattttttcttccatgaaatgggtttgaggttgaagataatatttgaattaataatgagtttgtagctgtacaaaga 20040140  T
Q  101 gctaaaggtgatggcgatgcgcgcaacagttgtagatgattagaaaagtttggagagaagccattaagattaggtgtgggagaacatgataagatttaat 200  Q
    |||||||||| |||||||    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20040141 gctaaaggtggtggcgat----gcagcagttgtagatgatgagaaaagtttggagagaagccattaagattaggtgtgggagaacatgataagatttaat 20040236  T
Q  201 agaagtgcacaatctaaccatttatcctatg 231  Q
    |||||||||||||||||||||||||||||||    
T  20040237 agaagtgcacaatctaaccatttatcctatg 20040267  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 39087406 - 39087496
Alignment:
Q  137 tgattagaaaagtttgga--gagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttat 225  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||    
T  39087406 tgatgagaaaagtttggaaagagaagcaattaagattaggtgtgggagaacatgataaggttttatagaaatgcaaaatctaaccatttat 39087496  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 39087291 - 39087377
Alignment:
Q  5 tgaatgttgaccctttgataattttttcttccat--gaaatgggtgtgaggttgaagataatatttgaattaataatgagtttgtag 89  Q
    |||||| ||||| ||| |||||||||||||||||  ||||||||| ||||||||| ||||| ||||||||||| |||| ||||||||    
T  39087291 tgaatgctgaccgtttaataattttttcttccatatgaaatgggtttgaggttgatgataagatttgaattaaaaatgggtttgtag 39087377  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 38544236 - 38544318
Alignment:
Q  142 agaaaagtttgga--gagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatt 222  Q
    |||||||||||||  ||||| ||||||  |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  38544236 agaaaagtttggaatgagaaaccattagaattaggtgtgagagagcatgataagatttaatagaagtgtacaatctaaccatt 38544318  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 2320142 - 2320211
Alignment:
Q  157 gaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  2320142 gaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 2320211  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 18246315 - 18246229
Alignment:
Q  142 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  18246315 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 18246229  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 16990509 - 16990595
Alignment:
Q  142 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  16990509 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 16990595  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 37242091 - 37242005
Alignment:
Q  142 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  37242091 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 37242005  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 1258803 - 1258717
Alignment:
Q  142 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||| ||||||||||||||||    
T  1258803 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcataatctaaccatttatc 1258717  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 13810019 - 13809979
Alignment:
Q  186 atgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  13810019 atgataagctttaatagaagtgcacaatgtaaccatttatc 13809979  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 34873626 - 34873684
Alignment:
Q  157 gaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatct 215  Q
    ||||| ||| |||| || ||||||||||||||||||| |||||||||| ||||| ||||    
T  34873626 gaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcactatct 34873684  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 31234254 - 31234168
Alignment:
Q  142 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 226  Q
    ||||||||||||| ||  |||| ||| |||| || ||| ||||||||||||||| |||||||||| || ||||||||| ||||||||    
T  31234254 agaaaagtttggaaagtgaagctattgagatcagatgtaggagaacatgataagctttaatagaaatgtacaatctaatcatttatc 31234168  T

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