View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_high_6 (Length: 535)
Name: NF18444_high_6
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 38484748 - 38485257
Alignment:
| Q |
13 |
tagggatgcaattcataggatgaagctaaggtatggacttggtcatccttttaagaagctcgattctaaccaggctgatgccaagaaatttgctttgtta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484748 |
tagggatgcaattcataggatgaagctaaggtatggacttggtcatccttttaagaagctcgattctaaccaggctgatgccaagaaatttgctttgtta |
38484847 |
T |
|
| Q |
113 |
tggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggtta |
212 |
Q |
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| T |
38484848 |
tggaacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggtta |
38484947 |
T |
|
| Q |
213 |
ttcgttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagttgattctcatgataggaggctttggagaaagat |
312 |
Q |
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| T |
38484948 |
ttcgttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagttgattctcatgataggaggctttggagaaagat |
38485047 |
T |
|
| Q |
313 |
atgtaagtacgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaacacctgtttcgacagattatcagacctgatagtgaagaacattct |
412 |
Q |
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| T |
38485048 |
atgtaagtatgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaacacctgtttcgacagattatcagacctgatagtgaagaaaattct |
38485147 |
T |
|
| Q |
413 |
attgtgactgctatgtttcaagaaattgatcattcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagt |
512 |
Q |
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| T |
38485148 |
attgtgactgctatgtttcaagaagttgatcattcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagt |
38485247 |
T |
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| Q |
513 |
tgataaaact |
522 |
Q |
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| T |
38485248 |
tgataaaact |
38485257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 522
Target Start/End: Original strand, 30119147 - 30119653
Alignment:
| Q |
16 |
ggatgcaattcataggatgaagctaaggtatggacttggtcatccttttaagaagctcgattctaaccaggctgatgccaagaaatttgctttgttatgg |
115 |
Q |
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|||||| || |||||| ||||||| |||||||| ||||||| || | | ||||||||| |||||||||| ||| ||||| || ||||||||| ||||| |
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| T |
30119147 |
ggatgccatccataggttgaagctcaggtatgggcttggtcggccctacaggaagctcgagtctaaccaggttgaggccaacaagtttgctttgatatgg |
30119246 |
T |
|
| Q |
116 |
aacgagataattatgtcctttagagaggaagatatcatttctgataaagaggttgagctgctggagctgccaaacaatgcttggaatgttagggttattc |
215 |
Q |
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|||||||||||| |||| ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||| | || ||||||||||| ||||||||| |
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| T |
30119247 |
aacgagataattttgtcttttagggaggaggatattatctctgacagagaggttgagctgctggagctgccacagaactcttggaatgttcgggttattc |
30119346 |
T |
|
| Q |
216 |
gttggccgtgttttcttctctgcaatgagttgctactggctttaagcgaggctaaagaactagttgattctcatgataggaggctttggagaaagatatg |
315 |
Q |
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||||||| ||||||||||||||||| ||||| || || ||| | || |||| |||||||||||| || | ||||| |||||||| | |||||||| |
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| T |
30119347 |
gttggccatgttttcttctctgcaacgagttactgcttgctctcagtcaggccaaagaactagttaatgatactgataagaggctttataagaagatatg |
30119446 |
T |
|
| Q |
316 |
taagtacgagttcaggagatgcgctgtggttgaagcatatgactgtatcaaacacctgtttcgacagattatcagacctgatagtgaagaacattctatt |
415 |
Q |
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| | |||| ||| | || |||||| | ||||||||||| || | || ||| || ||| ||||||||| ||| | |||||||| ||||| ||| |
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| T |
30119447 |
cagctctgagtacagacgctgtgctgtgatcgaagcatatgatagtgtgaagcacttgcttcatgagattatcaaacccaacagtgaagagcattcgatt |
30119546 |
T |
|
| Q |
416 |
gtgactgctatgtttcaagaaattgatcattcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttga |
515 |
Q |
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||||||| | ||||||| ||||||||||| || ||||||||| ||||||||| || ||||||||| |||||||| |||||||| || |||||||| |
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| T |
30119547 |
gtgactgttctgtttcaggaaattgatcactctcttgagattgagaaattcactaatacattcaaaacaactgcactgccccagcttcaccacaagttga |
30119646 |
T |
|
| Q |
516 |
taaaact |
522 |
Q |
| |
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||||||| |
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| T |
30119647 |
taaaact |
30119653 |
T |
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Back To:
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