View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18444_high_9 (Length: 454)
Name: NF18444_high_9
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 4091587 - 4092017
Alignment:
| Q |
6 |
gaggaggagcagagataggagaaggaatgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattat |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4091587 |
gaggagaagcagagataggagaaggaatgcttctgtttggaatttctttgaattttttaattcccacttctttacaaagctctgcatctgctatgattat |
4091686 |
T |
|
| Q |
106 |
aagaggttgtcttcccatatgaaatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttacatcaaaattt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4091687 |
aagaggttgtcttcccatatgaaatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttgcatcaaaattt |
4091786 |
T |
|
| Q |
206 |
tcttttaaaattgattttgctaatctcattaattattattnnnnnnnntaaagattaatatttgttttaatttagaaaatatcctaaataaaatattaac |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4091787 |
tcttttaaaattgattttgctaatctc----attattattaaaaaaaataaagattaatatttgttttaatttagaaaatatcctaaataaaatattaac |
4091882 |
T |
|
| Q |
306 |
cctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagtannnnnnnnccccaagcattatccactaggctagggttcgtagc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4091883 |
cctagtctcaaacttgcatgtaataacaaatgctagcatccaaatacacaagtagta-tttttttccccaagcattatccactaggctagggttcgtagc |
4091981 |
T |
|
| Q |
406 |
catcatgactaggctgaagttcatcctcatcaaaaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4091982 |
catcatgactaggctgaagttcatcctcatcaaaaa |
4092017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 48182435 - 48182321
Alignment:
| Q |
20 |
ataggagaaggaatgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattataagaggttgtcttc |
119 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| || ||||| || |||||||| || ||||||||||||| ||||| || || ||||||| |
|
|
| T |
48182435 |
ataggagagggagtgcttctgtttggaatgtctttaaattttttgattccaacctctttacacagttctgcatctgctactattattagtggctgtcttc |
48182336 |
T |
|
| Q |
120 |
ccatatgaaatctgc |
134 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48182335 |
ccatatgaaatctgc |
48182321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University