View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_11 (Length: 452)
Name: NF18444_low_11
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 6486367 - 6486616
Alignment:
| Q |
9 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
108 |
Q |
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| T |
6486367 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
6486466 |
T |
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| Q |
109 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaatggttctgcagcgaactgcaccatgt |
208 |
Q |
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| T |
6486467 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaacggttctgcagcgaactgcaccatgt |
6486566 |
T |
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| Q |
209 |
tcatgcaaagaatccaaatagctcgtctagtgagctaagggtcatcgaac |
258 |
Q |
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| T |
6486567 |
acatgcaaagaatccaaatagctcgtctagtgagctaagggtcatcgaac |
6486616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 319 - 436
Target Start/End: Original strand, 6486678 - 6486795
Alignment:
| Q |
319 |
ggagagaccttccagggtcgtagtagtaagggctcatgggggaggcggcgctgctgctacgcatggcatagtcatcgtcagtataggcttctgttgtgga |
418 |
Q |
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| T |
6486678 |
ggagagaccttccagggtcgtagtagtaagggctcatgggggaggcggcgctgctgctacgcatggcatagtcatcgtcagtataggcttctgttgtgga |
6486777 |
T |
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| Q |
419 |
aaatcggggttcggattg |
436 |
Q |
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| T |
6486778 |
aaatcggggttcggattg |
6486795 |
T |
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