View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_low_16 (Length: 395)

Name: NF18444_low_16
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_low_16
NF18444_low_16
[»] chr5 (3 HSPs)
chr5 (98-236)||(40599708-40599845)
chr5 (328-378)||(40599532-40599582)
chr5 (98-236)||(42268611-42268749)
[»] chr7 (2 HSPs)
chr7 (98-232)||(43032282-43032415)
chr7 (98-236)||(24718209-24718346)
[»] chr3 (1 HSPs)
chr3 (98-232)||(31699417-31699551)
[»] chr2 (1 HSPs)
chr2 (98-226)||(9910838-9910966)
[»] chr1 (1 HSPs)
chr1 (160-236)||(2077225-2077300)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 40599845 - 40599708
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccattacattccaactaccaacccaagtgcaaaaaccttat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  40599845 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaa-gacaccattacattccaactaccaacccaagtgcaaaaaccttat 40599747  T
Q  198 gtaaccaacactaataaccacccacatcatcgttaactc 236  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  40599746 gtaaccaacactaataaccacccacatcatcgttgactc 40599708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 40599582 - 40599532
Alignment:
Q  328 tttatatgcccacagattttccgaaccaagattaataattgaagtaggacc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40599582 tttatatgcccacagattttccgaaccaagattaataattgaagtaggacc 40599532  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 42268749 - 42268611
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta 196  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||| ||       ||||||||| || || ||||| |||||||||   |||||||  ||    
T  42268749 ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaa-gacaccatttacgtttcaactcccaacccaacaacaaaaacaata 42268651  T
Q  197 tgtaaccaacactaataaccacccacatcatcgttaactc 236  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  42268650 tgtaaccaacaccaataaccacccacatcatcgttaactc 42268611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 43032415 - 43032282
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta 196  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||        |||||||| |||||| |||| |||||||||  |||||| |||||    
T  43032415 ccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaat-acaccatttacattctaactcccaacccaacagcaaaa-cctta 43032318  T
Q  197 tgtaaccaacactaataaccacccacatcatcgtta 232  Q
    |||||||||||| |||||||||||||||||||||||    
T  43032317 tgtaaccaacaccaataaccacccacatcatcgtta 43032282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 24718209 - 24718346
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta 196  Q
    ||||||||||||||||| | ||| || ||||||||||||||||||  |       ||||||||| || || ||||| |||||||||   |||||||   |    
T  24718209 ccaactcacaagcttctaatcattaataccaaaatatcaccaccacacaaaaaa-gacaccatttacgtttcaactcccaacccaacaacaaaaacaa-a 24718306  T
Q  197 tgtaaccaacactaataaccacccacatcatcgttaactc 236  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24718307 tgtaaccaacaccaataaccacccacatcatcgttaactc 24718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 31699417 - 31699551
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacacca-ttacattccaactaccaacccaagtgcaaaaacctta 196  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| |       ||||||| |||| |||||||| |||||||||   |||||||||||    
T  31699417 ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatac-aaaaaagacaccatttacgttccaactcccaacccaacaacaaaaacctta 31699515  T
Q  197 tgtaaccaacactaataaccacccacatcatcgtta 232  Q
     ||| |||||||  |||| |||||||||||||||||    
T  31699516 cgtagccaacacctataagcacccacatcatcgtta 31699551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 9910838 - 9910966
Alignment:
Q  98 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccattaca-ttccaactaccaacccaagtgcaaaaacctta 196  Q
    |||||| |||||||||| | ||||||||||||||||||||||||| ||        ||||||||  | ||| |||| |||||||||  | ||||||||||    
T  9910838 ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaat-acaccatttaagttcaaactcccaacccaacaggaaaaacctta 9910936  T
Q  197 tgtaaccaacactaataaccacccacatca 226  Q
    ||||||||||||  ||||||||||||||||    
T  9910937 tgtaaccaacacctataaccacccacatca 9910966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 2077300 - 2077225
Alignment:
Q  160 ttacattccaactaccaacccaagtgcaaaaaccttatgtaaccaacactaataaccacccacatcatcgttaactc 236  Q
    ||||||||||| | |||||||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  2077300 ttacattccaaatcccaacccaacatcaaaaacct-atgtaaccatcaccaataaccacccacatcatcgttaactc 2077225  T

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