View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_17 (Length: 392)
Name: NF18444_low_17
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 3576080 - 3575722
Alignment:
| Q |
14 |
ttcttgagtcattgaatgtgttgataatgagcattgcataggagaattgaggttttctagttgtggaagttgtaggaaattattagcatcattattatta |
113 |
Q |
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| T |
3576080 |
ttcttgagtcattgaatgtgttgataatgagcattgcataggagaattgaggttttctagttgtggaagttgtaggaaattattagcatcattattatta |
3575981 |
T |
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| Q |
114 |
atgtgtatattgtattgcaattgatccaactcttgtttgcaagggtaatgctgttgttgatgttggtatgatgcattataagggtgatgagaagaaattc |
213 |
Q |
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| T |
3575980 |
atgtgtatattgtattgcaattgatccaactcttgtttgcaaggataatgctgttgttgatgttggtatgatgcattataagggtgatgagaagaaattc |
3575881 |
T |
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| Q |
214 |
tgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctcattgttgtagctattcgtttctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575880 |
tgcttggggattcaagctctgattgcatgaatgatacttgatcatcataccaacatggtgaatcgtccattttcctcattgttgtagctattcgtttctt |
3575781 |
T |
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| Q |
314 |
gaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagac |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575780 |
gaacactttacacacaacccatccttcttcctataaaatatgtgcttattacattagac |
3575722 |
T |
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