View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_20 (Length: 376)
Name: NF18444_low_20
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 39 - 376
Target Start/End: Original strand, 36900001 - 36900338
Alignment:
| Q |
39 |
gtcaccaatcgaggaagtccggttaacggtgnnnnnnnccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgc |
138 |
Q |
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| T |
36900001 |
gtcaccaatcgaggaagtccggttaacggtgaaaaaaaccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgc |
36900100 |
T |
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| Q |
139 |
gctctcctctcctttctcaaccaattcttcgcataccgaaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccccctcggccacc |
238 |
Q |
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| T |
36900101 |
gctctcctctcctttctcaaccaattcttcgcataccgaaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccccctcggccacc |
36900200 |
T |
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| Q |
239 |
tcatggcctccgtgttaccttcaaagacgttcaggatcccaggttttggatcgaaacggttttcgtttaacccaggtccgtttaacatgaaggaacatgt |
338 |
Q |
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| T |
36900201 |
tcatggcctccgtgttaccttcaaagacgttcaggatcccaggttttggatcgaaacggttttcgtttaacccaggtccgtttaacatgaaggaacatgt |
36900300 |
T |
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| Q |
339 |
tcttattaccatatttgcaaatgctggagctgcatttg |
376 |
Q |
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| T |
36900301 |
tcttattaccatatttgcaaatgctggggctgcgtttg |
36900338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 2176335 - 2176185
Alignment:
| Q |
77 |
ccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgcgctctcctctcctttctcaaccaattcttcgcataccg |
176 |
Q |
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||||||||||||| | ||||||||||| ||||| |||||||| ||||||| | |||||| | ||||| || || ||||||||||||||||| ||||| |
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| T |
2176335 |
ccgacgacccaacccaaccagtatggacattccgtatgtggttcttaggtctcatttcatgctcactcctttctttcctcaaccaattcttcgcttaccg |
2176236 |
T |
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| Q |
177 |
aaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccc |
227 |
Q |
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| T |
2176235 |
tacagaaccactcatcatcactctcataaccgttcaggtagctacactccc |
2176185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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