View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_25 (Length: 358)
Name: NF18444_low_25
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 91 - 340
Target Start/End: Original strand, 6236982 - 6237231
Alignment:
| Q |
91 |
gcaatagtgcaaatatctagtgggggtaattgttgggattgtgaggtgattggtagtgttttttcattgtcccggtactttctagatcgtgaggcaatgg |
190 |
Q |
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| T |
6236982 |
gcaatagtccaaatatctagtgggggtaattgttgggattgtgaggtgattggtagtgttttttcattgtcccgatactttctagatcgtgaggcaatgg |
6237081 |
T |
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| Q |
191 |
catgcgcatcacaccggattttgcacactatttcatgattttgctaagcaatattgtcaaaccaaaggagatgatatttaggaaacttaatgctaaaggt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6237082 |
catgcgcatcacaccggattttgcacactatttcatgattttgctaagcaatattgtcaaaccaaaggagatgatatttaggaaacttaatgctaaaggt |
6237181 |
T |
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| Q |
291 |
cgagtgtcttcacatttagaacaaaaggtgggtcactaaatggaggaaac |
340 |
Q |
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| T |
6237182 |
cgagtgtcttcacatttagaacaaaaggtgggtcactaaatggaggaaac |
6237231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 33891595 - 33891451
Alignment:
| Q |
112 |
gggggtaattgttgggattgtgaggtgattggtagtgttttttcattgtcccggtactttctagatcgtgaggcaatggcatgcgcatcacaccggattt |
211 |
Q |
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| T |
33891595 |
gggggtaattgttgggattgtgaggtggttggtagtgttttctcattgccctaatactttctagatcacgaggcgatgacatgcacatcgtgtctgattc |
33891496 |
T |
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| Q |
212 |
tgcacactatttcatgattttgctaagcaatattgtcaaaccaaa |
256 |
Q |
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| T |
33891495 |
tgcacactatttcatcattttgttgagcaatattgtcaaaccaaa |
33891451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 33952653 - 33952797
Alignment:
| Q |
112 |
gggggtaattgttgggattgtgaggtgattggtagtgttttttcattgtcccggtactttctagatcgtgaggcaatggcatgcgcatcacaccggattt |
211 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||| |||| | |||| |
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| T |
33952653 |
gggggtaattgttgggattgtgaggtggttggtagtgttttctcattgccctaatactttctagatcacgaggcgatgacatgcacatcgtgtctgattc |
33952752 |
T |
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| Q |
212 |
tgcacactatttcatgattttgctaagcaatattgtcaaaccaaa |
256 |
Q |
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| T |
33952753 |
tgcacactatttcatcattttgttgagcaatattgtcaaaccaaa |
33952797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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