View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_27 (Length: 320)
Name: NF18444_low_27
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 48720457 - 48720154
Alignment:
| Q |
1 |
cattctcaacaaagttggtgagctcatccaacatatccttttgtttttctttccttctaattatattcacacaacaaaatcaacattttgaacagcgaaa |
100 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48720457 |
cattctcaacaaagttggtgagcacacccaacatatccttttgtttttctttccttctaattatattcacacaacaaaatcaacattttgaacagcgaaa |
48720358 |
T |
|
| Q |
101 |
taggaattttttgtaaccattgctttcatgaaaaattgacatcactgaatggtgtgaaaccatagcatagaaaatcctcaattatacaaacacaagaaga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48720357 |
taggaattttttgtaactattgctttcatgaaaaattgacatcactggatggtgtgaaaccatagcatagaaaatcctcaattatacaaacacaacaaga |
48720258 |
T |
|
| Q |
201 |
aaataatgaacttgtccacactcttcacgatattgtatgtgttttgttttgtatacattttcagtcctcaaatttacttcctttgacatccacaacgaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48720257 |
aaataatgaacttgtccacactcttcacgatattgtatgtgttttgttttgtatacattttcagtcctcaaatttacttcctttgacatccacaacgaac |
48720158 |
T |
|
| Q |
301 |
ctat |
304 |
Q |
| |
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|||| |
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|
| T |
48720157 |
ctat |
48720154 |
T |
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