View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_low_28 (Length: 314)

Name: NF18444_low_28
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_low_28
NF18444_low_28
[»] chr4 (46 HSPs)
chr4 (111-243)||(32934106-32934238)
chr4 (111-225)||(12034390-12034504)
chr4 (155-243)||(38932783-38932870)
chr4 (155-243)||(51150892-51150980)
chr4 (111-243)||(13834335-13834467)
chr4 (142-214)||(46804794-46804866)
chr4 (155-243)||(4161849-4161937)
chr4 (156-248)||(37197545-37197637)
chr4 (144-279)||(8170890-8171026)
chr4 (141-225)||(40317748-40317832)
chr4 (141-225)||(40327822-40327906)
chr4 (142-209)||(37687236-37687303)
chr4 (122-228)||(2161944-2162049)
chr4 (153-211)||(7616951-7617009)
chr4 (111-217)||(17381292-17381398)
chr4 (153-239)||(31241039-31241125)
chr4 (153-211)||(51234279-51234337)
chr4 (162-275)||(51234396-51234510)
chr4 (141-214)||(4161660-4161733)
chr4 (146-243)||(56095063-56095160)
chr4 (155-211)||(924811-924867)
chr4 (141-217)||(29223405-29223481)
chr4 (141-225)||(42375217-42375301)
chr4 (164-210)||(8755847-8755893)
chr4 (155-225)||(38080920-38080990)
chr4 (132-230)||(46805782-46805880)
chr4 (155-212)||(971897-971954)
chr4 (163-214)||(8170759-8170810)
chr4 (154-225)||(8755948-8756019)
chr4 (155-206)||(12922218-12922269)
chr4 (159-214)||(23716599-23716654)
chr4 (157-208)||(26404625-26404676)
chr4 (111-243)||(45615750-45615883)
chr4 (143-225)||(4215152-4215233)
chr4 (122-176)||(20217486-20217540)
chr4 (197-243)||(24806696-24806742)
chr4 (155-225)||(40407622-40407691)
chr4 (152-214)||(40836892-40836954)
chr4 (158-211)||(14810440-14810493)
chr4 (155-228)||(35075673-35075746)
chr4 (157-226)||(35575968-35576037)
chr4 (152-212)||(40407505-40407566)
chr4 (132-249)||(46433541-46433658)
chr4 (111-204)||(50384358-50384451)
chr4 (155-243)||(9057306-9057394)
chr4 (156-188)||(21241811-21241843)
[»] chr6 (28 HSPs)
chr6 (144-243)||(25085051-25085150)
chr6 (111-225)||(10219545-10219659)
chr6 (152-258)||(31315234-31315339)
chr6 (154-214)||(9762608-9762668)
chr6 (121-225)||(21021077-21021181)
chr6 (141-243)||(10067687-10067789)
chr6 (159-249)||(12278220-12278310)
chr6 (155-225)||(17848812-17848882)
chr6 (142-212)||(7792051-7792121)
chr6 (153-211)||(31803957-31804015)
chr6 (145-225)||(26293535-26293613)
chr6 (153-212)||(31142179-31142238)
chr6 (142-212)||(13392330-13392400)
chr6 (144-209)||(12291631-12291696)
chr6 (154-211)||(19264720-19264777)
chr6 (122-239)||(34937448-34937565)
chr6 (156-212)||(21020904-21020960)
chr6 (153-225)||(33806700-33806772)
chr6 (155-210)||(921443-921498)
chr6 (170-249)||(7515593-7515672)
chr6 (155-210)||(8161466-8161521)
chr6 (150-224)||(22260410-22260485)
chr6 (155-210)||(24084630-24084685)
chr6 (190-224)||(23140528-23140562)
chr6 (155-208)||(33551086-33551139)
chr6 (155-243)||(6524986-6525073)
chr6 (155-211)||(7955149-7955205)
chr6 (157-213)||(34937846-34937902)
[»] scaffold0687 (1 HSPs)
scaffold0687 (155-276)||(1629-1751)
[»] chr8 (36 HSPs)
chr8 (155-276)||(7603945-7604067)
chr8 (141-210)||(6915514-6915582)
chr8 (121-225)||(29911560-29911664)
chr8 (146-225)||(7680994-7681073)
chr8 (142-209)||(36469457-36469524)
chr8 (159-228)||(3093932-3094001)
chr8 (153-241)||(13002947-13003035)
chr8 (141-208)||(10708612-10708679)
chr8 (132-227)||(31824282-31824377)
chr8 (141-243)||(21600440-21600542)
chr8 (144-229)||(2986921-2987005)
chr8 (152-274)||(1249211-1249333)
chr8 (144-243)||(3662357-3662456)
chr8 (126-225)||(12125869-12125968)
chr8 (152-211)||(18080445-18080504)
chr8 (126-249)||(42844855-42844978)
chr8 (166-212)||(8340125-8340171)
chr8 (141-211)||(15822832-15822902)
chr8 (144-243)||(41303115-41303216)
chr8 (141-243)||(42659841-42659943)
chr8 (111-208)||(8340307-8340403)
chr8 (164-229)||(21145430-21145495)
chr8 (111-211)||(2987143-2987242)
chr8 (153-233)||(14523735-14523815)
chr8 (155-227)||(34281386-34281458)
chr8 (150-225)||(6393829-6393904)
chr8 (155-210)||(29908950-29909005)
chr8 (155-225)||(19793535-19793605)
chr8 (151-225)||(33508666-33508740)
chr8 (168-226)||(41979071-41979129)
chr8 (153-186)||(8491354-8491387)
chr8 (111-212)||(8982265-8982366)
chr8 (155-208)||(18451855-18451908)
chr8 (155-212)||(21600635-21600691)
chr8 (161-198)||(35447597-35447634)
chr8 (142-210)||(4586789-4586857)
[»] chr3 (30 HSPs)
chr3 (153-225)||(3941795-3941867)
chr3 (159-225)||(34979160-34979226)
chr3 (144-225)||(7672499-7672579)
chr3 (152-225)||(43838807-43838880)
chr3 (132-207)||(24255249-24255324)
chr3 (113-211)||(30843802-30843900)
chr3 (169-226)||(27071248-27071305)
chr3 (141-214)||(38989767-38989840)
chr3 (155-212)||(40619187-40619244)
chr3 (141-233)||(22235225-22235317)
chr3 (156-279)||(36080575-36080699)
chr3 (155-225)||(21568517-21568587)
chr3 (153-215)||(22235477-22235539)
chr3 (132-226)||(32537448-32537541)
chr3 (141-214)||(17571997-17572070)
chr3 (125-186)||(26483059-26483120)
chr3 (156-225)||(41897894-41897963)
chr3 (155-208)||(47944335-47944388)
chr3 (144-208)||(32536455-32536519)
chr3 (141-188)||(31186677-31186724)
chr3 (157-212)||(34294102-34294157)
chr3 (159-206)||(43908656-43908703)
chr3 (113-188)||(46848391-46848466)
chr3 (197-243)||(5800249-5800295)
chr3 (155-229)||(45681174-45681248)
chr3 (142-178)||(12832078-12832114)
chr3 (119-243)||(14984422-14984546)
chr3 (132-249)||(20936478-20936599)
chr3 (141-229)||(44380066-44380154)
chr3 (164-279)||(47199890-47200006)
[»] chr2 (31 HSPs)
chr2 (141-229)||(29926684-29926772)
chr2 (142-209)||(28779821-28779888)
chr2 (153-242)||(19206469-19206558)
chr2 (141-214)||(34883936-34884009)
chr2 (142-206)||(6923848-6923912)
chr2 (161-221)||(20966204-20966264)
chr2 (155-214)||(6788481-6788540)
chr2 (159-210)||(13478769-13478820)
chr2 (153-243)||(12676431-12676521)
chr2 (113-223)||(40124274-40124384)
chr2 (159-212)||(2687156-2687209)
chr2 (156-225)||(43191794-43191863)
chr2 (155-243)||(30256267-30256355)
chr2 (142-209)||(1090283-1090350)
chr2 (144-203)||(6686777-6686836)
chr2 (158-208)||(43191977-43192027)
chr2 (164-225)||(20167430-20167491)
chr2 (155-188)||(29488709-29488742)
chr2 (196-248)||(23359437-23359489)
chr2 (153-225)||(28834881-28834953)
chr2 (151-243)||(41746375-41746466)
chr2 (155-226)||(18903152-18903223)
chr2 (152-225)||(7165612-7165686)
chr2 (158-211)||(21603675-21603728)
chr2 (197-230)||(25765398-25765431)
chr2 (156-225)||(29926872-29926941)
chr2 (157-225)||(8001948-8002016)
chr2 (157-213)||(14441102-14441158)
chr2 (160-212)||(15301379-15301431)
chr2 (141-225)||(20167576-20167660)
chr2 (155-199)||(39095111-39095155)
[»] chr5 (41 HSPs)
chr5 (158-225)||(37853437-37853504)
chr5 (111-243)||(917124-917256)
chr5 (146-243)||(11534932-11535029)
chr5 (154-243)||(33598302-33598391)
chr5 (159-228)||(33855360-33855429)
chr5 (153-225)||(9955313-9955385)
chr5 (144-225)||(3599836-3599917)
chr5 (146-243)||(11497992-11498089)
chr5 (146-242)||(11505349-11505445)
chr5 (146-242)||(11512743-11512839)
chr5 (146-242)||(11520119-11520215)
chr5 (146-242)||(11527527-11527623)
chr5 (155-211)||(23159081-23159137)
chr5 (153-225)||(26675253-26675325)
chr5 (153-225)||(26946861-26946933)
chr5 (164-243)||(7756963-7757042)
chr5 (165-208)||(8814414-8814457)
chr5 (163-226)||(19342499-19342562)
chr5 (144-243)||(27769813-27769910)
chr5 (142-212)||(6217419-6217489)
chr5 (144-225)||(8206067-8206149)
chr5 (141-211)||(17676566-17676636)
chr5 (164-214)||(28503836-28503886)
chr5 (141-214)||(7756667-7756740)
chr5 (153-225)||(16750273-16750345)
chr5 (153-213)||(28561428-28561488)
chr5 (151-210)||(8814031-8814090)
chr5 (181-227)||(2707659-2707705)
chr5 (141-199)||(12403102-12403160)
chr5 (141-211)||(31949278-31949348)
chr5 (153-219)||(33204527-33204592)
chr5 (163-225)||(37853260-37853322)
chr5 (113-214)||(27001381-27001482)
chr5 (159-208)||(28297487-28297536)
chr5 (155-243)||(463181-463268)
chr5 (146-186)||(8407219-8407259)
chr5 (155-243)||(9023384-9023471)
chr5 (141-213)||(22579500-22579572)
chr5 (164-228)||(32503486-32503549)
chr5 (152-188)||(34033230-34033265)
chr5 (171-243)||(39194868-39194940)
[»] chr1 (36 HSPs)
chr1 (158-225)||(32743314-32743381)
chr1 (153-214)||(29795255-29795316)
chr1 (144-225)||(30050578-30050659)
chr1 (164-229)||(34177465-34177530)
chr1 (152-239)||(8983972-8984059)
chr1 (141-211)||(39162444-39162514)
chr1 (153-210)||(3450517-3450574)
chr1 (134-211)||(14926315-14926392)
chr1 (169-241)||(3728097-3728169)
chr1 (150-214)||(8234310-8234374)
chr1 (126-225)||(35607167-35607267)
chr1 (155-191)||(50155562-50155598)
chr1 (152-211)||(29795100-29795159)
chr1 (154-233)||(45679714-45679793)
chr1 (144-211)||(51849552-51849619)
chr1 (141-179)||(28620443-28620481)
chr1 (141-243)||(33747307-33747409)
chr1 (145-214)||(8778994-8779063)
chr1 (111-228)||(31134705-31134822)
chr1 (156-225)||(39329975-39330044)
chr1 (121-214)||(45679522-45679615)
chr1 (153-210)||(46187336-46187393)
chr1 (144-221)||(47921944-47922020)
chr1 (154-226)||(6450058-6450130)
chr1 (141-225)||(19464253-19464337)
chr1 (141-225)||(34826835-34826918)
chr1 (164-208)||(40193067-40193111)
chr1 (155-194)||(16192259-16192298)
chr1 (157-243)||(38901669-38901753)
chr1 (111-225)||(6727980-6728094)
chr1 (142-212)||(27900658-27900728)
chr1 (155-213)||(37980405-37980463)
chr1 (153-226)||(8987417-8987490)
chr1 (141-205)||(30050338-30050402)
chr1 (159-211)||(34177333-34177385)
chr1 (172-220)||(41363343-41363391)
[»] chr7 (39 HSPs)
chr7 (153-223)||(1052430-1052500)
chr7 (144-207)||(3116838-3116901)
chr7 (153-248)||(40089801-40089896)
chr7 (115-210)||(46720016-46720111)
chr7 (153-211)||(8929501-8929559)
chr7 (142-208)||(39608582-39608648)
chr7 (142-198)||(5429508-5429564)
chr7 (155-230)||(10228752-10228827)
chr7 (153-236)||(16916277-16916360)
chr7 (163-214)||(46719828-46719879)
chr7 (112-178)||(1247507-1247573)
chr7 (141-211)||(14669495-14669565)
chr7 (162-216)||(27233676-27233730)
chr7 (159-225)||(27376471-27376537)
chr7 (111-209)||(38838646-38838744)
chr7 (155-225)||(41707267-41707337)
chr7 (155-225)||(18942789-18942860)
chr7 (144-225)||(27080797-27080877)
chr7 (144-225)||(27197424-27197504)
chr7 (149-214)||(29197151-29197216)
chr7 (171-248)||(30792908-30792984)
chr7 (111-211)||(45539990-45540091)
chr7 (111-243)||(19303525-19303656)
chr7 (164-239)||(23457610-23457685)
chr7 (155-210)||(23457814-23457869)
chr7 (155-210)||(23474559-23474614)
chr7 (155-206)||(25618160-25618211)
chr7 (124-243)||(34703650-34703768)
chr7 (163-225)||(2980173-2980235)
chr7 (141-243)||(6983313-6983415)
chr7 (142-212)||(32996499-32996569)
chr7 (195-279)||(41870545-41870631)
chr7 (153-214)||(3399929-3399990)
chr7 (159-243)||(8062749-8062831)
chr7 (164-241)||(40077633-40077710)
chr7 (142-210)||(5358246-5358314)
chr7 (139-211)||(14239772-14239844)
chr7 (164-224)||(40355055-40355115)
chr7 (159-211)||(43510275-43510327)
[»] scaffold0022 (1 HSPs)
scaffold0022 (153-225)||(82875-82947)
[»] scaffold0003 (2 HSPs)
scaffold0003 (155-243)||(328817-328905)
scaffold0003 (152-214)||(329031-329093)
[»] scaffold0252 (1 HSPs)
scaffold0252 (155-225)||(17142-17211)
[»] scaffold0005 (1 HSPs)
scaffold0005 (158-211)||(29235-29288)
[»] scaffold0211 (1 HSPs)
scaffold0211 (155-243)||(20037-20124)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 32934238 - 32934106
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| ||||||||| | | |||||  || |||||| ||| |||||||||||||||||||||||||||||||||| || | || |||||||||||||    
T  32934238 attttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagt 32934139  T
Q  211 ctctaacattaaaatgttttattcatattgtca 243  Q
     ||||||||||||||  ||| || |||||||||    
T  32934138 ttctaacattaaaataatttgttaatattgtca 32934106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 12034390 - 12034504
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| ||||||||||| |||||| | ||||||||| ||| ||||||||||||||  |||||||| | |||||||| | | ||||||||||||||||    
T  12034390 attttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttagtcaaaatagt 12034489  T
Q  211 ctctaacattaaaat 225  Q
    |||| ||| ||||||    
T  12034490 ctctgacactaaaat 12034504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 38932870 - 38932783
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||||||||| | || || ||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  38932870 aatgtatcaaaattttaaatt-gtcttcgattgtacattttgttagtcaaaatagtctctaacattaaaatatttcattaatattgtca 38932783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 51150892 - 51150980
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||||||||||||  ||||||| |||| ||||||| ||||||||| ||||||||||||| |||| || |||||||||    
T  51150892 aatgtatcaaaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagtccctaacattaaaatattttgttaatattgtca 51150980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 13834335 - 13834467
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| ||||||||| | | ||||   || |||||| ||| ||| ||||||||||||||||||||  |||||||| || | ||||||||||||||||    
T  13834335 attttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagt 13834434  T
Q  211 ctctaacattaaaatgttttattcatattgtca 243  Q
    || ||||||||||||  ||| || |||||||||    
T  13834435 ctttaacattaaaataatttgttaatattgtca 13834467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 46804794 - 46804866
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||    
T  46804794 acaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctct 46804866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 4161937 - 4161849
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||| ||||||| ||||||| || ||||| |||| |||||||||||||||||| | | |||||||||||| ||| |||||||||    
T  4161937 aatgtatcacaattttacaatagttattaattgtgcattttgttagtcaaaatagtctatgatattaaaatgtttcattaatattgtca 4161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 37197637 - 37197545
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatca 248  Q
    |||||||||| ||||||||||||  |||||||  ||||  ||||||||||||||||| ||| |||||||||||| ||| ||||||||| ||||    
T  37197637 atgtatcaaagttttaaaatagtccttgattgggcatttcgttagtcaaaatagtctttaatattaaaatgtttgattaatattgtcatatca 37197545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 8171026 - 8170890
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||| ||| ||||||| ||||||| |||||||| | ||||| | || |  ||||||||||||| ||||||| |||||||||||| ||| |||||||||    
T  8171026 aatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtca 8170927  T
Q  244 aatcaaaatttcaat-tatttacttgttgtcatatca 279  Q
     || |  | |||||| || |||||| |||||||||||    
T  8170926 tattagtacttcaatatacttacttattgtcatatca 8170890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 40317832 - 40317748
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||| | ||||||| ||| ||||||||||||  ||||||||||| | ||||| |||||||||||||| || |||||||    
T  40317832 cacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatcaaaatagtctctgacgttaaaat 40317748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 40327906 - 40327822
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||| | ||||||| ||| ||||||||||||  ||||||||||| | ||||| |||||||||||||| || |||||||    
T  40327906 cacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatcaaaatagtctctgacgttaaaat 40327822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 37687303 - 37687236
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||| || || ||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  37687303 acaataatttctcaatatatcaaaattttaaaatagtttttgattgtacactatattagtcaacatag 37687236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 2162049 - 2161944
Alignment:
Q  122 tgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatta 221  Q
    ||||||| | |||||| | ||||||||||| |   ||||||||| ||||||||||||  ||||||||||  ||||| |||||||||||||||| || |||    
T  2162049 tgaatgtgtaacgagtagtcacaatagttcatcggtgtatcaaa-ttttaaaatagtcattgattgtaccatatgtaagtcaaaatagtctcttacctta 2161951  T
Q  222 aaatgtt 228  Q
    |||||||    
T  2161950 aaatgtt 2161944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 7617009 - 7616951
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||| |||||||||||||||||||||||| | || | |||||||||||||||||    
T  7617009 ttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtc 7616951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 17381292 - 17381398
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||||||||| |  | ||| | ||||||||| | | ||||||||||||||| |||| ||| | |||| || || | ||||||||||||||||    
T  17381292 attttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctgatagtccactttgttagtcaaaatagt 17381391  T
Q  211 ctctaac 217  Q
    |||||||    
T  17381392 ctctaac 17381398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 31241039 - 31241125
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatatt 239  Q
    |||||||||| ||||||| ||||||||| |||||||  ||||| |||||||||||  ||||| |||||||||| |||| || |||||    
T  31241039 ttaatgtatcgaaattttgaaatagtttatgattgtgtattatattagtcaaaatgatctcttacattaaaatattttgttaatatt 31241125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 51234279 - 51234337
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||| ||||||||||||||||||| | | ||||| ||||||||||||||||||||||    
T  51234279 ttaatggatcaaaattttaaaatagtctctcattgtgcattatgttagtcaaaatagtc 51234337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 51234510 - 51234396
Alignment:
Q  162 caaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaatttcaat-ta 260  Q
    ||||||||||||||||| | | | | | ||||  ||||||||||||||||||| |  ||||||||||||||| ||||||||| || ||| ||||||| ||    
T  51234510 caaaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatattaaactttcaatata 51234411  T
Q  261 tttacttgttgtcat 275  Q
     |||||| |||||||    
T  51234410 cttacttattgtcat 51234396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 4161660 - 4161733
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||| | | ||||||||||||||| ||||||||  |||||| |||||| |||| |||||||||||||||    
T  4161660 cacaatagtccttcaatgtatcaaaatttcaaaatagtccttgattatacattctgttggtcaaaatagtctct 4161733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 56095063 - 56095160
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || |||||||||    
T  56095063 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtca 56095160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 924867 - 924811
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||| ||||||||||||||||| | ||||| | ||||||||||||||||||||||    
T  924867 aatgtagcaaaattttaaaatagtatctgattatgcattatgttagtcaaaatagtc 924811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 29223481 - 29223405
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaac 217  Q
    ||||||||||| | ||| ||||||||||||| |||| |   ||||||| || |||||||||||||||||||||||||    
T  29223481 cacaatagttcatcaatatatcaaaattttataataatccatgattgtgcactatgttagtcaaaatagtctctaac 29223405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 42375301 - 42375217
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||| ||| |||||||||| |||||| ||| |||||||||||| | || |  |||||| |||||||||||| ||||||||||    
T  42375301 cacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgttagttaaaatagtctctgacattaaaat 42375217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 8755847 - 8755893
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||    
T  8755847 aaattttaaaatagtttttgattttgcattttgttagtcaaaatagt 8755893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 38080990 - 38080920
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||||| |  |||| | ||||  ||||||||||||||| | ||||||||||||    
T  38080990 aatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaatagtttgtaacattaaaat 38080920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 46805782 - 46805880
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtttt 230  Q
    |||||| | ||||||||| ||| ||||||| ||||||||||| ||||  ||||||||||| |  ||||||||||||| | | | |||||||||| ||||    
T  46805782 acgagtagccacaatagtacctcaatgtattaaaattttaaagtagtcattgattgtacacttcgttagtcaaaataatatttgacattaaaatatttt 46805880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 971897 - 971954
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||||||||| |||||||| ||||||||| || | ||||||||||| ||||||    
T  971897 aatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagtct 971954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 8170759 - 8170810
Alignment:
Q  163 aaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||| |||||||| ||||||||| || | ||||||||||||||||||||    
T  8170759 aaaatttcaaaatagtctttgattgtgcactttgttagtcaaaatagtctct 8170810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 8756019 - 8755948
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||| ||||||||||||||| |  |||||| | || |  |||| |||||||||||||||||||||||||    
T  8756019 taatgtaacaaaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaat 8755948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 12922218 - 12922269
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaa 206  Q
    |||||||| |||||| |||||||||||||||||| ||  |||||||||||||    
T  12922218 aatgtatcgaaatttcaaaatagtttttgattgtgcacgatgttagtcaaaa 12922269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 23716599 - 23716654
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||| ||||||||||||||||||||||||  || | ||||||| ||||||||||||    
T  23716599 tatcgaaattttaaaatagtttttgattgcgcactctgttagttaaaatagtctct 23716654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 26404676 - 26404625
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||||||||||||| |||||  |||||||||  |||||||||||||    
T  26404676 tgtatcaaaattttaaaataatttttagttgtacatttcgttagtcaaaata 26404625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 45615883 - 45615750
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgta--cattatgttagtcaaaata 208  Q
    |||||||| ||||||||| | | |||||  || |||||| ||| ||||| || |||||||||| ||||  ||||||||   || | ||||||||||||||    
T  45615883 attttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtttcgaaattttaaa-tagtccttgattgtgtgcactttgttagtcaaaata 45615785  T
Q  209 gtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||| ||||||||  ||| || |||||||||    
T  45615784 gtctctaatattaaaataatttgttaatattgtca 45615750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 4215233 - 4215152
Alignment:
Q  143 caatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||| ||| |||| ||||||||||||||||||| |  |||||| || |  |||| |||||||||||||| ||||||||||    
T  4215233 caatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaatagtctct-acattaaaat 4215152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 20217540 - 20217486
Alignment:
Q  122 tgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaata 176  Q
    ||||||||| |||||| | |||||||||  || ||||||||||||||||||||||    
T  20217540 tgaatgtataacgagtagccacaatagtctctcaatgtatcaaaattttaaaata 20217486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 24806742 - 24806696
Alignment:
Q  197 ttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||||||||||||||||  ||| || |||||||||    
T  24806742 ttagtcaaaatagtctctaacattaaaataatttgttaatattgtca 24806696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 40407691 - 40407622
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||||||||  |||||||| |||| || |||||||||| | |  ||||||||||||    
T  40407691 aatgtatcaaaattttaaaatagtcattgattgtgcatt-tgctagtcaaaattgccattaacattaaaat 40407622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 40836954 - 40836892
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||||||||| ||||||||||||||||  ||||||||  |   ||||||||||||||||||||    
T  40836954 cttaatgtattaaaattttaaaatagtcattgattgtgtaccgtgttagtcaaaatagtctct 40836892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 14810493 - 14810440
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||| ||||||||| |||||||| || | | |||||||||||||||    
T  14810493 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagtc 14810440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 35075673 - 35075746
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtt 228  Q
    ||||| ||||||||||||||||||  | || |||||| | |||| |||||||||||||||  | ||||||||||    
T  35075673 aatgtgtcaaaattttaaaatagtcatcgactgtacactttgttcgtcaaaatagtctcttccgttaaaatgtt 35075746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 35575968 - 35576037
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||||||||| |||||||||| ||||| ||| | |  |||||| |||||||| |||||| ||||||||    
T  35575968 tgtatcaaaattctaaaatagttcttgatcgtataattcgttagtgaaaatagtttctaacgttaaaatg 35576037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 40407505 - 40407566
Alignment:
Q  152 cttaatgtatcaaaattttaaaa-tagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||| || |||||||||||| |||| ||||||| |||| | ||||||||||||||||||    
T  40407505 cttaatgaattaaaattttaaaaatagtgtttgattttacactttgttagtcaaaatagtct 40407566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 46433658 - 46433541
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtttta 231  Q
    |||||||| |||||| || | | ||||||||||||||||  |||||  |||||||||| | |   ||||||||||||||  || | |||||||||||| |    
T  46433658 acgagtggtcacaattgtccttcaatgtatcaaaattttcgaataggctttgattgtatacttaattagtcaaaatagttcctgatattaaaatgtttca 46433559  T
Q  232 ttcatattgtcaaatcaa 249  Q
    || |||||| || |||||    
T  46433558 ttaatattggcatatcaa 46433541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 50384358 - 50384451
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaa 204  Q
    |||||||||||||||||| | | || | | || |||||| ||  ||||||| ||||||| |||||||| | ||||||| || ||||||||||||    
T  50384358 attttggttcctgaatgtgtaatgattagccataatagtaccccaatgtattaaaatttcaaaatagtctctgattgtgcactatgttagtcaa 50384451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 9057306 - 9057394
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||| ||||||||||  |||||||| || | | || |  |||||||||||| | | ||||| |||||||| |||||||||    
T  9057306 aatgtatcaaaatattaaaatagtaattgattgtgcactgtcttgggaaaaatagtctcttatactaaaacgttttattaatattgtca 9057394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 21241843 - 21241811
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgt 188  Q
    |||||||||||||||||||||||||| ||||||    
T  21241843 atgtatcaaaattttaaaatagttttcgattgt 21241811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 25085150 - 25085051
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||||||||||||  ||| || |||||||||    
T  25085150 aatagtaccttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtca 25085051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 10219545 - 10219659
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| ||||||||| | |||||| | ||||||||| ||||||||| || |||||| |||||||||  ||||||| || | ||||||||||||||||    
T  10219545 attttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagtcaaaatagt 10219644  T
Q  211 ctctaacattaaaat 225  Q
    |||| || |||||||    
T  10219645 ctctgacgttaaaat 10219659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 31315339 - 31315234
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaa 251  Q
    |||||||||| |||||||||||||||| ||||||||| || ||||||||| ||||||| |||| |||||||||| |||  |||||||||||| || || |    
T  31315339 cttaatgtattaaaattttaaaatagtctttgattgtgcactatgttagt-aaaatagactcttacattaaaatatttctttcatattgtcatattaata 31315241  T
Q  252 tttcaat 258  Q
    |||||||    
T  31315240 tttcaat 31315234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 9762668 - 9762608
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaatggtctct 9762608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 21021181 - 21021077
Alignment:
Q  121 ctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatt 220  Q
    |||||||| | | |||||| |||||| |||  |||| |||||||||||||||||||||| |||||| | |||| | |||||||||||||||  |||||||    
T  21021181 ctgaatgtgtaatgagtggtcacaatcgttttttaaagtatcaaaattttaaaatagttattgattatgcattttattagtcaaaatagtcattaacatt 21021082  T
Q  221 aaaat 225  Q
    |||||    
T  21021081 aaaat 21021077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 10067789 - 10067687
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattg 240  Q
    |||||||||  || |||||||| ||||||||||||||| | |||||||  ||| ||||| |||||||||||||| ||||||||||  ||| || ||||||    
T  10067789 cacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaatactttgttaatattg 10067690  T
Q  241 tca 243  Q
    |||    
T  10067689 tca 10067687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 12278310 - 12278220
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaa 249  Q
    ||||||||||||| |||||| ||||||| |  ||||||||||||||||| |||||| || |||||||||||  || ||||||||| |||||    
T  12278310 tatcaaaattttataatagtctttgattttctattatgttagtcaaaattgtctcttacgttaaaatgtttcgttaatattgtcatatcaa 12278220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 17848882 - 17848812
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||| |||  |||||| ||||  ||||||||||||||||| ||||||||||||    
T  17848882 aatgtatcaaaattttaaaataatttcagattgtgcatttcgttagtcaaaatagtctttaacattaaaat 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 7792051 - 7792121
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||| ||| ||||||||||||||| |||||||||| ||| |||||| | | ||||||||||||||||    
T  7792051 acaatagtccctcaatgtatcaaaatttgaaaatagtttatgaatgtacaatttattagtcaaaatagtct 7792121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 31803957 - 31804015
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||||||||||||||| ||||||||||| ||||  ||||||||||| ||||    
T  31803957 ttaatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaaacagtc 31804015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 26293613 - 26293535
Alignment:
Q  145 atagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||| | ||||||||||||||||||| | |||||| ||| |||||| |||||||||||||||||  ||||||||||||    
T  26293613 atagttcttcaatgtatcaaaattttaaatt-gttttttatt-tacattctgttagtcaaaatagtccttaacattaaaat 26293535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 31142238 - 31142179
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||| ||||||||||| |||||||| ||||||| |||| | ||||||||||||||||||    
T  31142238 ttaatatatcaaaatttcaaaatagtctttgattctacactctgttagtcaaaatagtct 31142179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 13392400 - 13392330
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||||| | |||||||||||| | | ||||||||| |||||||| ||| ||||| ||||||||||||    
T  13392400 acaatagttcatcaatgtatcaaaactctgaaatagtttatgattgtatattctgttaatcaaaatagtct 13392330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 12291696 - 12291631
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||| ||| ||||||| |||||||||||||||| |||||||||||| | ||||| | |||||||    
T  12291696 aatagtccctcaatgtattaaaattttaaaatagtctttgattgtacactttgttaattaaaatag 12291631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 19264777 - 19264720
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||| ||||||||||||||| | ||||| | || |||||||||||||||||||    
T  19264777 taatgtatcgaaattttaaaatagtctctgattatgcactatgttagtcaaaatagtc 19264720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 34937448 - 34937565
Alignment:
Q  122 tgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatta 221  Q
    ||||||| | |||||| | ||||||||||| | |||||||| |||||| |||||| | |  |||||| || || ||||||||||||| | ||| || |||    
T  34937448 tgaatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatttcaaaatattatccgattgtgcactaagttagtcaaaataatatcttacgtta 34937547  T
Q  222 aaatgttttattcatatt 239  Q
    |||||||| ||| |||||    
T  34937548 aaatgtttcattaatatt 34937565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 21020904 - 21020960
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||||||||||||||||||  | |||| |||||| | ||||||||||||||||    
T  21020904 atgtatcaaaattttaaaatagtcatcgattatacatttttttagtcaaaatagtct 21020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 33806700 - 33806772
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||| ||||| |||||||||  |||||| |  | | ||||||||||||||||||||||| |||||||    
T  33806700 ttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgttaaaat 33806772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 921443 - 921498
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||||||||||||| | |||||||||  ||||| ||||||||| ||||    
T  921443 aatgtatcaaaattttaaaataatatttgattgtgtattattttagtcaaagtagt 921498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 7515672 - 7515593
Alignment:
Q  170 taaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaa 249  Q
    |||||||||  |||||| | |||||| |||||||||||| |||||  ||||||||||||| ||| ||||| ||| |||||    
T  7515672 taaaatagtcattgattatgcattatcttagtcaaaatactctcttgcattaaaatgtttcattaatattatcatatcaa 7515593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 8161521 - 8161466
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||||||||  |||||| ||||| |||||| ||| ||||||||||||||||    
T  8161521 aatgtatcaaaattcaaaaatatttttttattgtatattttgttagtcaaaatagt 8161466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 22260410 - 22260485
Alignment:
Q  150 tccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc-taacattaaaa 224  Q
    |||| ||||||||||||||||||||||||  |||||||| || | || |||| |||||||| || |||||||||||    
T  22260410 tcctcaatgtatcaaaattttaaaatagtcattgattgtgcactttgctagttaaaatagtatcttaacattaaaa 22260485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 24084630 - 24084685
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||||||||||||||| ||| | | |||| | ||||||||||||||||    
T  24084630 aatgtatcaaaattttaaaatagtatttaaatatacactttgttagtcaaaatagt 24084685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 23140528 - 23140562
Alignment:
Q  190 cattatgttagtcaaaatagtctctaacattaaaa 224  Q
    |||| ||||||||||||||||||||||||||||||    
T  23140528 cattttgttagtcaaaatagtctctaacattaaaa 23140562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 33551139 - 33551086
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||||||||||||||| | | ||||||| ||||  |||||||||||||    
T  33551139 aatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaata 33551086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 6525073 - 6524986
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||||||||| | || ||||||| |||| |  ||| ||||||||||||  ||||||||||||  || ||| |||||||||    
T  6525073 aatgtatcaaaattttaaatt-gtctttgattatacacttcgtttgtcaaaatagtccgtaacattaaaatacttcattaatattgtca 6524986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 7955205 - 7955149
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||||||||||||| || |  |||||||| || | |||||||||||||||||    
T  7955205 aatgtatcaaaattttaaagtattcattgattgttcactgtgttagtcaaaatagtc 7955149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 34937846 - 34937902
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc 213  Q
    ||||||||||||| |||||| |||||||||||  | | ||||| |||||||||||||    
T  34937846 tgtatcaaaatttcaaaataatttttgattgtgtactttgttaatcaaaatagtctc 34937902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 1629 - 1751
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaattt 254  Q
    |||||||||||||||||||||| ||||||||||| || |  ||| ||||||||||||||||| ||| |||||| | ||| ||||||||| || ||  |||    
T  1629 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatattaatcttt 1728  T
Q  255 caat-tatttacttgttgtcata 276  Q
    |||| ||||||||| ||||||||    
T  1729 caatatatttacttattgtcata 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 7603945 - 7604067
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaattt 254  Q
    |||||||||||||||||||||| ||||||||||| || |  ||| ||||||||||||||||| ||| |||||| | ||| ||||||||| || ||  |||    
T  7603945 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatattaatcttt 7604044  T
Q  255 caat-tatttacttgttgtcata 276  Q
    |||| ||||||||| ||||||||    
T  7604045 caatatatttacttattgtcata 7604067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 6915582 - 6915514
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  6915582 cacaatagt-ccttaatgtatcaaaattttaaaataatttttgattgtgcattatgttaatcaaaatagt 6915514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 29911664 - 29911560
Alignment:
Q  121 ctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatt 220  Q
    |||||||| | |||||||| ||||||||||  |||||||||||||||||||||||||||  | | ||| || |  |||||||||||||||||||||| ||    
T  29911664 ctgaatgtgtaacgagtggccacaatagttgtttaatgtatcaaaattttaaaatagttcataagtgtccacttcgttagtcaaaatagtctctaacgtt 29911565  T
Q  221 aaaat 225  Q
    |||||    
T  29911564 aaaat 29911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 7681073 - 7680994
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||| ||| |||||||||||||||||||||||| ||||||||| ||||  |||||||||||| ||| |||||||||||||    
T  7681073 tagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaatcgtccctaacattaaaat 7680994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 36469457 - 36469524
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  36469457 acaataattcctcaatatatcaaaattttaaaatagtttttgattgtacactatattagtcaacatag 36469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 3094001 - 3093932
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtt 228  Q
    |||||||||||||||||||| ||| ||| || |||| ||||||||||||| ||| |||||||||||||||    
T  3094001 tatcaaaattttaaaatagtctttaattttatattacgttagtcaaaataatctttaacattaaaatgtt 3093932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 13002947 - 13003035
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgt 241  Q
    ||||| || ||||||||||||||||| ||||||| | || ||||||||||||||| || ||| |||||||||||||  ||| |||||||    
T  13002947 ttaatataacaaaattttaaaatagtctttgattatgcactatgttagtcaaaattgtttcttacattaaaatgttgcattaatattgt 13003035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 10708679 - 10708612
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    ||||||||| | |||||||||  ||||||||||||||| ||||||| || ||||||||||||||||||    
T  10708679 cacaatagtccattaatgtatataaattttaaaatagtctttgattatatattatgttagtcaaaata 10708612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 31824377 - 31824282
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgt 227  Q
    ||||| || ||||||||| | ||||| |||||||||||||||||| | |||| |||||  |||| |||||||||||||||| | | ||||||||||    
T  31824377 acgagcggtcacaatagtcctttaatatatcaaaattttaaaataatatttgtttgtatgttatattagtcaaaatagtcttttatattaaaatgt 31824282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 21600440 - 21600542
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattg 240  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||| ||||  |||| | ||| ||||| || |  ||||||| ||| ||| ||||||    
T  21600440 cacaatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatattg 21600539  T
Q  241 tca 243  Q
    |||    
T  21600540 tca 21600542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 2986921 - 2987005
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    |||||| | |||||| ||||||||||||||||||||| ||| ||| |||| |||||||||||||||| | |||  |||||||||||    
T  2986921 aatagtcctttaatgcatcaaaattttaaaatagtttatga-tgtgcattttgttagtcaaaatagtatttaatgttaaaatgttt 2987005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 1249333 - 1249211
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaa 251  Q
    |||||||||| ||||||| ||| | ||  |||||||||||||  ||||||||||||| ||| |||||||||||| |||| || ||| ||||| ||||  |    
T  1249333 cttaatgtattaaaatttcaaatt-gtcattgattgtacatttcgttagtcaaaataatctataacattaaaatattttgttaatactgtcatatcagta 1249235  T
Q  252 tttcaat-tatttacttgttgtca 274  Q
     |||||| ||||||||| ||||||    
T  1249234 cttcaatatatttacttattgtca 1249211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 3662357 - 3662456
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||| ||   || | |||||| ||||| ||| |||||||||  ||| || |||||||||    
T  3662357 aatagtccctcaatgtatcaaaattttaaaatagttcttgattgtgcacattgcttgtcaaattagtccctagcattaaaataatttgttaatattgtca 3662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 12125968 - 12125869
Alignment:
Q  126 tgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||| || ||||| ||||||||||  | ||||||| |||||||||||||||||| |||  || || | |||||||||||||| ||  ||||||||||||    
T  12125968 tgtataacaagtggtcacaatagtttttaaatgtatgaaaattttaaaatagtttatgacggtgcactttgttagtcaaaataatcaataacattaaaat 12125869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 18080504 - 18080445
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||||||||| |||||| ||||||||||| || ||||||| | |||||||||    
T  18080504 cttaatgtatcaaaatttcaaaatattttttgattgtgcactatgttattgaaaatagtc 18080445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 42844855 - 42844978
Alignment:
Q  126 tgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||| |||| ||| |||||| || | | ||||||||||||||||  |||||  |||||||||||| |   ||||||||||||||  || | ||||||||    
T  42844855 tgtataacgattggtcacaattgtccttcaatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaat 42844954  T
Q  226 gttttattcatattgtcaaatcaa 249  Q
    |||| ||| ||||||||| |||||    
T  42844955 gtttcattaatattgtcatatcaa 42844978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 8340125 - 8340171
Alignment:
Q  166 attttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  8340125 attttaaaatagtttttgattgtgcactatgttagtcaagatagtct 8340171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 15822832 - 15822902
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||| | ||||||| ||||||||||||| ||||||| |||| | | || |||||||||||||||||||    
T  15822832 cacaataatcccttaatatatcaaaattttagaatagttcttgagtttgcaatatgttagtcaaaatagtc 15822902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 41303216 - 41303115
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc--taacattaaaatgttttattcatattgt 241  Q
    |||||| ||| ||||||||||||||||||||||||  |||||| | || | || |||||||||||||| |  ||||||||||||  ||| || |||||||    
T  41303216 aatagtccctcaatgtatcaaaattttaaaatagtcattgattatgcactttgctagtcaaaatagtcccgataacattaaaataatttgttaatattgt 41303117  T
Q  242 ca 243  Q
    ||    
T  41303116 ca 41303115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 42659841 - 42659943
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattg 240  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||||||||| || |   ||||||||| | |||| | | |||||||||||| ||  ||||||    
T  42659841 cacaatagttctttaatgtataaaatttttaaaataatttttgattgtgcaatccattagtcaaagttgtctttgatattaaaatgtttcatcaatattg 42659940  T
Q  241 tca 243  Q
    |||    
T  42659941 tca 42659943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 8340403 - 8340307
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||| ||||||||| | |||| | ||||| ||| | |||||||||||||| || |||||| ||||||||||| ||||  | |||||||||||    
T  8340403 attttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaa-ttcaaaataatttttgattgtgcatttcgctagtcaaaata 8340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 21145430 - 21145495
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    |||||| |||||||||  | ||||| || |||||||||||||||||||||| || |||||||||||    
T  21145430 aaatttcaaaatagttcataattgtgcactatgttagtcaaaatagtctcttacgttaaaatgttt 21145495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 2987242 - 2987143
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||| |||||   |||| | | ||||||||||| | |||||||||||||||||||||||| | |||||| | | ||||||||||  ||||||    
T  2987242 attttggttcctaaatgtgaaacgattagtcacaatagttc-tcaatgtatcaaaattttaaaatagtctctgattggaaactatgttagtcggaatagt 2987144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 14523735 - 14523815
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttatt 233  Q
    ||||| |||||||||||||||||  | ||| |||||||| ||||||| | |||||  ||||| || |||||||||||||||    
T  14523735 ttaatatatcaaaattttaaaatgatatttaattgtacactatgttatttaaaatgttctcttacgttaaaatgttttatt 14523815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 34281386 - 34281458
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgt 227  Q
    |||||| |||||||||||||||||  |||||| | || |||||||||||||||| ||||| ||  ||||||||    
T  34281386 aatgtaccaaaattttaaaatagtccttgattatgcactatgttagtcaaaataatctcttacgctaaaatgt 34281458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 6393829 - 6393904
Alignment:
Q  150 tccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||| |||||||| |||||| |||||||||  ||||||| || | | ||||||||||||||  |||||||||||||    
T  6393829 tcctcaatgtatcgaaatttcaaaatagttcatgattgtgcactttattagtcaaaatagttcctaacattaaaat 6393904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 29908950 - 29909005
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||  |||||||||||||||| |||||||| ||||  |||||||||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaatagt 29909005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 19793605 - 19793535
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||||| | | |||||||  | |||||||||||  ||||||| || |||||||    
T  19793605 aatgtatcaaaattttaaaatagtgtataattgtacgatttgttagtcaaataagtctcttacgttaaaat 19793535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 33508740 - 33508666
Alignment:
Q  151 ccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||| |||||| ||||||||| |||| ||| ||||   ||| |||||||| ||||| ||||||||||    
T  33508740 ccttaatgtatcgaaatttcaaaatagttattgagtgtgcatttcattaatcaaaataatctctgacattaaaat 33508666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 41979071 - 41979129
Alignment:
Q  168 tttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    ||||||||||||||||||||| || ||| |||||| ||||| | |||||| ||||||||    
T  41979071 tttaaaatagtttttgattgtccactatattagtcgaaataatttctaacgttaaaatg 41979129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 8491354 - 8491387
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgatt 186  Q
    |||||||||||||||||||||||||| |||||||    
T  8491354 ttaatgtatcaaaattttaaaatagtatttgatt 8491387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 8982366 - 8982265
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||| ||| |||||||||| | || | | |||||||||| ||  ||||||||||||||||||||| | | ||||||| |||||  ||||| |||| |||    
T  8982366 atttttgtttctgaatgtataatgattagtcacaatagtttctcgatgtatcaaaattttaaaatattctatgattgtgcattacattagtgaaaaaagt 8982267  T
Q  211 ct 212  Q
    ||    
T  8982266 ct 8982265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 18451855 - 18451908
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||||||||||||||| ||||| |||||| | | ||||||| ||||||    
T  18451855 aatgtatcaaaattttaaaataattttttattgtagaatctgttagttaaaata 18451908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 21600691 - 21600635
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||||||||  |||||||| ||||||||| |||| ||| ||||||||||||||    
T  21600691 aatgtatcaaaattc-aaaatagtctttgattgtgcattctgtaagtcaaaatagtct 21600635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 35447597 - 35447634
Alignment:
Q  161 tcaaaattttaaaatagtttttgattgtacattatgtt 198  Q
    |||||||||||||||||||||||||||| || ||||||    
T  35447597 tcaaaattttaaaatagtttttgattgtgcactatgtt 35447634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 4586789 - 4586857
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||  |||||||||| |||||||||||||||| | ||||| | || |  |||||||||||||||    
T  4586789 acaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaaatagt 4586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 3941867 - 3941795
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||||||||||  || |||| ||||| |||||||||||||||||||||||||| ||||    
T  3941867 ttaatgtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaatagtctctaacattgaaat 3941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 34979226 - 34979160
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||    
T  34979226 tatcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaatagtctctcacattaaaat 34979160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 7672579 - 7672499
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||| | ||||||| ||||||||||| | || | |||||||||||| |||||||||||||||||||||||||||||||    
T  7672579 aatagttcatcaatgtattaaaattttaaatt-gtctctgattgtacattttgttagtcaaaatagtctctaacattaaaat 7672499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 43838880 - 43838807
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||||||||  |||||||| |||| |||||||||||||||||| | || |||||||    
T  43838880 cttaatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtctttgacgttaaaat 43838807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 24255249 - 24255324
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaat 207  Q
    |||||||| || |||||||||| |||||||||||| ||| ||||||||  |||||||||||||| ||||| |||||    
T  24255249 acgagtggtcataatagttcctcaatgtatcaaaaattttaaatagttcatgattgtacattatattagttaaaat 24255324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 30843900 - 30843802
Alignment:
Q  113 tttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||||||| | | |||| | |||||||||  |||||||||||||||||  |||||||| | ||||||| || | ||||| |||||||||||    
T  30843900 tttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactttgttaatcaaaatagtc 30843802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 27071248 - 27071305
Alignment:
Q  169 ttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||||||| |||||| ||  |||||||||||||||||||||||| |||||||||||    
T  27071248 ttaaaatagtctttgatagtgaattatgttagtcaaaatagtctcttacattaaaatg 27071305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 38989767 - 38989840
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||| | | ||||||||||||||||||||||||   ||||| | ||||||||| |||||||||||||||    
T  38989767 cacaatagtccatcaatgtatcaaaattttaaaatagtccgtgattatgcattatgttcgtcaaaatagtctct 38989840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 40619244 - 40619187
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||||||||||||||||||| | ||||||| || ||||||| ||||||||||||    
T  40619244 aatgtatcaaaattttaaaatagtctctgattgtgcactatgttattcaaaatagtct 40619187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 22235225 - 22235317
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttatt 233  Q
    ||||||||| | | ||||||| ||||||| ||||||||   |||||||||| |  ||||||||||||||||||| || |||||||||| ||||    
T  22235225 cacaatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctctcacgttaaaatgttctatt 22235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 36080575 - 36080699
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaatttc 255  Q
    |||||||||||||| |||||| |   ||||||| || | |||||||||  ||||||||||| |||||||||||| ||| ||||||||  || ||   |||    
T  36080575 atgtatcaaaatttcaaaataatccctgattgttcactttgttagtcatcatagtctctaatattaaaatgtttcattaatattgtcgtattaattcttc 36080674  T
Q  256 aat-tatttacttgttgtcatatca 279  Q
    | | |||||||||||||||||||||    
T  36080675 agtatatttacttgttgtcatatca 36080699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 21568587 - 21568517
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||| ||||||||||| |||||| || || | ||||| |||||||||||||| ||| ||||||    
T  21568587 aatgtatcaaaaatttaaaatagtctttgatagtgcactctgttattcaaaatagtctctgacactaaaat 21568517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 22235539 - 22235477
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctcta 215  Q
    |||||||||| |||||| |||||| ||||||||||| || | |||||||||||||| ||||||    
T  22235539 ttaatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaaataatctcta 22235477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 32537541 - 32537448
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||| | ||||||||| ||| |||||| |||||||| |||||||||||||||  |  | |||||| ||||||||||||||| || ||||||||    
T  32537541 acgagtagtcacaatagt-cctcaatgtaacaaaatttcaaaatagtttttgataatgaactatgtttgtcaaaatagtctctcacgttaaaatg 32537448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 17572070 - 17571997
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||||| | ||||||| |||||| ||||||||||| | ||| | |||| | ||||||||||||||||||    
T  17572070 cacaatagttcttcaatgtattaaaattctaaaatagtttattattctgcattttattagtcaaaatagtctct 17571997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 26483059 - 26483120
Alignment:
Q  125 atgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgatt 186  Q
    |||||| |||||| | |||||||||   |||||||||||||||| |||||||||||||||||    
T  26483059 atgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagtttttgatt 26483120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 41897894 - 41897963
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||| ||| || |||||| |||  || |||| |||||||||||||| ||||||||    
T  41897894 atgtatcaaaattttaaaaaagtcttagattgtgcatgttgctagttaaaatagtctctaatattaaaat 41897963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 47944335 - 47944388
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||| ||||||||||||||| ||||||||| || | ||||||||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 32536455 - 32536519
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    ||||||||||||||||||  ||||| ||||||| ||||||||||| ||||  |||||| ||||||    
T  32536455 aatagttccttaatgtattgaaattctaaaataatttttgattgtgcatttcgttagttaaaata 32536519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 31186724 - 31186677
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgt 188  Q
    |||||||||  ||| || ||||||||||||||||||||||||||||||    
T  31186724 cacaatagtctcttgatatatcaaaattttaaaatagtttttgattgt 31186677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 34294157 - 34294102
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||||| |||||||||| | ||||||| || | ||||||||||||||||||    
T  34294157 tgtatcaaaatcttaaaatagtatatgattgtgcactttgttagtcaaaatagtct 34294102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 43908656 - 43908703
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaa 206  Q
    |||||||||||||||| | ||||| |||||||||| ||||||||||||    
T  43908656 tatcaaaattttaaaacaattttttattgtacattttgttagtcaaaa 43908703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 46848466 - 46848391
Alignment:
Q  113 tttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgt 188  Q
    |||||| ||||||||| | | |||| | || |||||||||| ||||||||||||||| ||||||||  ||||||||    
T  46848466 tttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtccttgattgt 46848391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 5800249 - 5800295
Alignment:
Q  197 ttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||||| ||||||||||||||  || |||||||||    
T  5800249 ttagtcaaaatagtctcttacattaaaatgtttgtttaatattgtca 5800295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 45681174 - 45681248
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    ||||||||||||||| ||||||||  |||||||| |  ||| ||| |||||||||||||| |  |||||||||||    
T  45681174 aatgtatcaaaatttcaaaatagtccttgattgtgcgctatattaatcaaaatagtctcttatgttaaaatgttt 45681248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 12832078 - 12832114
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagt 178  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  12832078 acaatagtcccttaatgtatcaaagttttaaaatagt 12832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 14984422 - 14984546
Alignment:
Q  119 tcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaaca 218  Q
    |||||||||| | |||||| | ||||||||| ||| ||| |||| |||||| |||||| |   ||||||| || |  |||||||||||||||  || |||    
T  14984422 tcctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgaca 14984521  T
Q  219 ttaaaatgttttattcatattgtca 243  Q
    ||||||| |||  || |||||||||    
T  14984522 ttaaaatatttcgttaatattgtca 14984546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 20936599 - 20936478
Alignment:
Q  132 acgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgtt----agtcaaaatagtctctaacattaaaatgt 227  Q
    |||||||| |||||| || | | ||||||||||||||||  |||||  ||||||| |||| |  |||    |||||||||||| ||| | ||||||||||    
T  20936599 acgagtggtcacaattgtccttcaatgtatcaaaattttcgaataggctttgattatacacttagttagtcagtcaaaatagtttctgatattaaaatgt 20936500  T
Q  228 tttattcatattgtcaaatcaa 249  Q
    || ||| ||||||||| |||||    
T  20936499 ttcattaatattgtcatatcaa 20936478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 44380066 - 44380154
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    |||||| |||| ||| |||||  ||||||||||||||| ||| ||| |  |||||||||||||||||| ||  | || |||||||||||    
T  44380066 cacaattgttcattagtgtattgaaattttaaaatagtctttaattatgaattatgttagtcaaaataatcaattactttaaaatgttt 44380154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 47200006 - 47199890
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaaaatttcaat-tatt 262  Q
    |||||| ||||||||  ||||| ||||| | |||||||||||||||| ||  | ||||||||| || ||| ||||| ||| |||||   |||||| ||||    
T  47200006 aaatttcaaaatagtcattgatcgtacactttgttagtcaaaatagtttccgatattaaaatgcttcattaatattatcatatcaatcattcaatatatt 47199907  T
Q  263 tacttgttgtcatatca 279  Q
    ||||| || ||||||||    
T  47199906 tacttattatcatatca 47199890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 29926684 - 29926772
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||| | |||||||| ||| ||  ||||||||||    
T  29926684 cacaatagtttcttaatatatccaaattttaaaatagtttttgattgtacactatgttaattaaaatagtttcttacggtaaaatgttt 29926772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 28779888 - 28779821
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||| ||||| ||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  28779888 acaataattcctcaatatatcaaaattttaaaatagttattgattgtacactatattagtcaaaatag 28779821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 19206558 - 19206469
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtc 242  Q
    |||||||||||||||||||||||||||| ||||| | || | |||||||||||||| ||||| |  |||| |||| ||||| ||||||||    
T  19206558 ttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctgatgttaagatgtattattaatattgtc 19206469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 34883936 - 34884009
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||| ||| |||||||||||||||||||||||| | | ||||| || | ||||||||||||||||||||    
T  34883936 cacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatagtctct 34884009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 6923912 - 6923848
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaa 206  Q
    |||||| ||||| ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  6923912 acaataattcctcaatatatcaaaattttaaaatagttattgattgtacactatattagtcaaaa 6923848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 20966264 - 20966204
Alignment:
Q  161 tcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatta 221  Q
    |||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||||||    
T  20966264 tcaaaattttaaaatagtctttgattgtgcactttgttagtcaaaatagtctccaacatta 20966204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 6788540 - 6788481
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||||||||||||||||||||||||| ||||||| || | ||||||||| ||||||||||    
T  6788540 aatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtcagaatagtctct 6788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 13478820 - 13478769
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  13478820 tatcaaaattttaaaatagtttttgattgtgcattttattagtcaaaatagt 13478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 12676431 - 12676521
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||| |||| |||||||||| | ||||||| || |  ||||||||||||| | ||| || ||||||||||||||| |||||||||    
T  12676431 ttaatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtca 12676521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 40124274 - 40124384
Alignment:
Q  113 tttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||| | ||||||| | |||||| | ||||||||| | |||||||||| |||||||||||| || | ||||||| || |  ||||||||||||||||     
T  40124274 tttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatagtcc 40124373  T
Q  213 ctaacattaaa 223  Q
     ||||||||||    
T  40124374 ataacattaaa 40124384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 2687209 - 2687156
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  2687209 tatcaaaattttaaaatagtctttgattttgtattatgttagtcaaaatagtct 2687156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 43191794 - 43191863
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||||||||||||||| || | | |||||||||||| ||| | ||| ||||||||    
T  43191794 atgtatcaaaattttaaaatagtttttgattatatactttgttagtcaaaaaagtttttaatattaaaat 43191863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 30256355 - 30256267
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||||||||   | | ||||||||| |||||||||||||| |||||| ||| || ||||||| |||| || |||||||||    
T  30256355 aatgtatcaaaattttaattaaatatttgattgtgcattatgttagtcagaatagtttcttacgttaaaatattttgttaatattgtca 30256267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 1090350 - 1090283
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||| ||||| ||| || |||||||||||||||||||||||||||||| ||| ||| | |||||||    
T  1090350 acaataattcctcaatatagcaaaattttaaaatagtttttgattgtacactatattaattaaaatag 1090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 6686777 - 6686836
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtca 203  Q
    ||||||| || ||| |||||||||||||||||||||||||||||| || | |||||||||    
T  6686777 aatagtttctcaatatatcaaaattttaaaatagtttttgattgtgcactttgttagtca 6686836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 43192027 - 43191977
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    ||||||||||||||||||||||||| |||||||||| | ||| ||||||||    
T  43192027 gtatcaaaattttaaaatagttttttattgtacattttattaatcaaaata 43191977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 20167430 - 20167491
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||| ||||||| ||||||||||    
T  20167430 aaattttaaaatagttattgatcgtagatattgttagtcaaaacagtctctgacattaaaat 20167491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 29488709 - 29488742
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgt 188  Q
    ||||||||||||||||||||||||||||||||||    
T  29488709 aatgtatcaaaattttaaaatagtttttgattgt 29488742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 23359437 - 23359489
Alignment:
Q  196 gttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatca 248  Q
    |||||||||||||||||||||| |||||||||||| ||  |||||||| ||||    
T  23359437 gttagtcaaaatagtctctaacgttaaaatgttttgttactattgtcatatca 23359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 28834953 - 28834881
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||| |||||||| ||||||||||| |  ||||||| |||||||| ||||||||| ||| | ||||||||||    
T  28834953 ttaatatatcaaaaatttaaaatagtgtgagattgtatattatgtttgtcaaaatattctttgacattaaaat 28834881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 41746375 - 41746466
Alignment:
Q  151 ccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||| ||||||||||||||| | || | |||||||| | |  |||| |||||||||||||||||||||||||  || ||| |||||||||    
T  41746375 ccttaatatatcaaaattttaaatt-gtctctgattgtatacttcgttattcaaaatagtctctaacattaaaatacttcattaatattgtca 41746466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 18903223 - 18903152
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||||| ||||| ||||||||||| ||||||| || ||||||| ||||||| |||| |||  ||||||||    
T  18903223 aatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaatggtctttaatgttaaaatg 18903152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 7165612 - 7165686
Alignment:
Q  152 cttaatgtatcaaaattttaaaa-tagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||| ||| |||||||| ||||| |||||||| || | | |||||||||||||||  ||||||||||||    
T  7165612 cttaatgtattaaatttttaaaaatagttcttgattgtgcactttattagtcaaaatagtccttaacattaaaat 7165686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 21603728 - 21603675
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||| ||||||||  |||||||| || | |||||||||||||||||    
T  21603728 gtatcaaaatttcaaaatagtccttgattgtccactttgttagtcaaaatagtc 21603675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 25765398 - 25765431
Alignment:
Q  197 ttagtcaaaatagtctctaacattaaaatgtttt 230  Q
    ||||||||||||||||||||||||||||| ||||    
T  25765398 ttagtcaaaatagtctctaacattaaaatatttt 25765431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 29926941 - 29926872
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||||   ||||||| ||||   |||||||||||||||| | || |||||||    
T  29926941 atgtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaat 29926872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 8001948 - 8002016
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||| ||||||  ||||||||| |||||||| ||| | | |||||||||||||||||| || |||||||    
T  8001948 tgtaacaaaatgataaaatagtatttgattgaacactctattagtcaaaatagtctctgacgttaaaat 8002016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 14441158 - 14441102
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc 213  Q
    |||||| ||||||||||||||| | ||||| | |||||||||| ||||||| |||||    
T  14441158 tgtatcgaaattttaaaatagtatatgattatgcattatgttaatcaaaatggtctc 14441102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 15301379 - 15301431
Alignment:
Q  160 atcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||| |||||||||||  |||||| | || ||||||||||||||||||    
T  15301379 atcaaaattctaaaatagtttcagattgtgcgttttgttagtcaaaatagtct 15301431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 20167660 - 20167576
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||  || |||| |||||||||  |||||| |   |||||||||| | |||||| ||||||||||||| ||||||||||    
T  20167660 cacaatagtcactcaatgcatcaaaattgcaaaatattccctgattgtacactttgttagacaaaatagtctctgacattaaaat 20167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 39095111 - 39095155
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgtta 199  Q
    |||||||||||||||||||||||| | ||||||| |||| |||||    
T  39095111 aatgtatcaaaattttaaaatagtatctgattgtgcattttgtta 39095155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 37853504 - 37853437
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||| |||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||    
T  37853504 gtattaaaattttaaaatagtttttaattgtatactttgttagtcaaaatagtctctaacattaaaat 37853437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 917256 - 917124
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||||||||||||| | |  | | | |||||| || ||| |||||||| ||||||||||||||| |||||||||||| | | ||  ||||||||||    
T  917256 attttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagt 917157  T
Q  211 ctctaacattaaaatgttttattcatattgtca 243  Q
    |||| ||| |||||| |||| || |||||||||    
T  917156 ctctcacaataaaatattttgttaatattgtca 917124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 11535029 - 11534932
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| ||||||||||||||||||||  ||| || |||||||||    
T  11535029 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtctctaacattaaaataatttgttaatattgtca 11534932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 33598391 - 33598302
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||||||||||||  |||||| |||| ||| |||||||||||| | ||| | ||||||||||||  || |||||||||    
T  33598391 taatgtatcaaaattttaaaatagtcgttgattatacactatattagtcaaaataatttcttatattaaaatgtttctttaatattgtca 33598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 33855360 - 33855429
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtt 228  Q
    ||||||||||||||||| |||||||||||||||||||   ||| |||||||||||| || ||||||||||    
T  33855360 tatcaaaattttaaaattgtttttgattgtacattattcaagttaaaatagtctcttacgttaaaatgtt 33855429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 9955313 - 9955385
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||| ||| ||||||||| ||||| |||||||   ||||||||||||||||||||| ||||||||||||||    
T  9955313 ttaatgcatcgaaattttaatatagtatttgatttggcattatgttagtcaaaatagtttctaacattaaaat 9955385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 3599836 - 3599917
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||| ||||||||||  ||||||||||||||| |||||||||  ||| ||||| ||||||| |||||| || |||||||    
T  3599836 aatagttacttaatgtattgaaattttaaaatagtgtttgattgtgtattttgttaatcaaaatggtctctcacgttaaaat 3599917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 11498089 - 11497992
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || |||||||||    
T  11498089 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtca 11497992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 11505445 - 11505349
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtc 242  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || ||||||||    
T  11505445 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtc 11505349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 11512839 - 11512743
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtc 242  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || ||||||||    
T  11512839 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtc 11512743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 11520215 - 11520119
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtc 242  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || ||||||||    
T  11520215 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtc 11520119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 11527623 - 11527527
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtc 242  Q
    |||| ||| |||||||||||||||||||||||| ||||||| | || | |  ||||||| |||||| |||||||||||||  ||| || ||||||||    
T  11527623 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtc 11527527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 23159081 - 23159137
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||||||||||||||| ||||||||| ||||  |||||| |||||||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtc 23159137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 26675325 - 26675253
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||| ||| ||||||||| ||||||||| |||| ||||| |||||||||||| | ||| ||||||    
T  26675325 ttaatgtatcaatattctaaaatagtctttgattgtgcattctgttactcaaaatagtctatgacactaaaat 26675253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 26946933 - 26946861
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||| ||| ||||||||| ||||||||| |||| ||||| |||||||||||| | ||| ||||||    
T  26946933 ttaatgtatcaatattctaaaatagtctttgattgtgcattctgttactcaaaatagtctatgacactaaaat 26946861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 7756963 - 7757042
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||  || || ||  ||| |||||||||||||||||||||||||||||||  ||| || |||||||||    
T  7756963 aaattttaaaatagtccttaatcgttgattttgttagtcaaaatagtctctaacattaaaattgtttgttaatattgtca 7757042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 8814457 - 8814414
Alignment:
Q  165 aattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  8814457 aattttaaaatagtttttgattgtgcattatgttagttaaaata 8814414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 19342562 - 19342499
Alignment:
Q  163 aaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||| | ||| || ||||||||    
T  19342562 aaaattttaaaatagtttttgattgtgcattatattagtcaatataatatcttacgttaaaatg 19342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 27769813 - 27769910
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||| ||| ||||||| |||| |||||| | |||||||||| |||| |  ||||||||| |||||| ||||||||||||| ||||||| |||||||||    
T  27769813 aatagtccctcaatgtataaaaaatttaaatt-gtttttgatt-tacacttcgttagtcaagatagtcactaacattaaaatattttattaatattgtca 27769910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 6217419 - 6217489
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||  ||||||||||||||||||||||||| | | ||||||| |||| || |||| ||||||||||    
T  6217419 acaatagtcacttaatgtatcaaaattttaaaataatatctgattgtgcattttgatagttaaaatagtct 6217489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 8206067 - 8206149
Alignment:
Q  144 aatagttccttaatgtatcaaaa-ttttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||| ||||||||| |||| |||||||||||| ||||||||| ||   ||||| |||||||||||||| || |||||||    
T  8206067 aatagttctttaatgtataaaaaattttaaaatagtctttgattgtgcacattgttaatcaaaatagtctctgacgttaaaat 8206149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 17676566 - 17676636
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||  || |||||||||||||| |||||||||| |||||||| || | ||||||||||| |||||    
T  17676566 cacaatagtctctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagtc 17676636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 28503836 - 28503886
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  28503836 aaattttaaaatagtctttaattgtgcattctgttagtcaaaatagtctct 28503886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 7756740 - 7756667
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||||||| |||||||  |||||| ||||||||   |||||||||| |  |||||||||||||||||||    
T  7756740 cacaatagttcctgaatgtattgaaatttcaaaatagtcaatgattgtacaattcgttagtcaaaatagtctct 7756667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 16750345 - 16750273
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||||||||  | ||||| || | | ||||||| ||| |||||| ||||||||||    
T  16750345 ttaatgtatcaaaattttaaaatagttcataattgtgcactctattagtcacaatcgtctctgacattaaaat 16750273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 28561488 - 28561428
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc 213  Q
    ||||||||||| |||||||||||| |||||||||||  | ||||||| | |||||||||||    
T  28561488 ttaatgtatcagaattttaaaataatttttgattgtgtactatgttatttaaaatagtctc 28561428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 8814031 - 8814090
Alignment:
Q  151 ccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||| ||||| ||||| |||||| | |||||||||||||| | ||||||||||||||    
T  8814031 ccttaatatatcataatttcaaaataatatttgattgtacattttattagtcaaaatagt 8814090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 2707659 - 2707705
Alignment:
Q  181 ttgattgtacattatgttagtcaaaatagtctctaacattaaaatgt 227  Q
    ||||||||| ||||| ||||||||||| |||||| ||||||||||||    
T  2707659 ttgattgtagattatattagtcaaaatggtctcttacattaaaatgt 2707705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 12403102 - 12403160
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgtta 199  Q
    |||||| |||| | ||||||||||||| ||||||||||| |||||||| |||| |||||    
T  12403102 cacaattgttcatcaatgtatcaaaatattaaaatagttcttgattgtgcattctgtta 12403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 31949348 - 31949278
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||  |||||| ||| |||||||||| | ||| | ||||||| || |||||||||||||||||||    
T  31949348 cacaatagtctcttaatatattaaaattttaagagagtctctgattgtgcactatgttagtcaaaatagtc 31949278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 33204592 - 33204527
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacat 219  Q
    ||||||||| ||||||| || |||||||||||||||||| |  |||| | |||||||||||||||||    
T  33204592 ttaatgtattaaaattt-aagatagtttttgattgtacaattcgttaattaaaatagtctctaacat 33204527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 37853260 - 37853322
Alignment:
Q  163 aaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||| | ||||||||| || | |||||||||||||||||  ||||| ||||||    
T  37853260 aaaattttaaaataatctttgattgtgcactttgttagtcaaaatagtcaataacactaaaat 37853322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 27001482 - 27001381
Alignment:
Q  113 tttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||| ||||||| | | |||| | |||||||||  ||  || |||||||||||||||||||| | ||||||| || | ||||| ||||||| ||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctgattgtgcactctgttactcaaaatggtct 27001383  T
Q  213 ct 214  Q
    ||    
T  27001382 ct 27001381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 28297536 - 28297487
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||| |||||||||||||| |||||| |||||| | ||||||||||||    
T  28297536 tatcaacattttaaaatagttgttgattatacattttattagtcaaaata 28297487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 463181 - 463268
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||||||||||| ||||||| | |||||||  | ||||||||| ||||||||| || || |||||| ||||| || |||| ||||    
T  463181 aatgtatcaaaattttgaaatagtatctgattgt-gactatgttagttaaaatagtcccttacgttaaaaagttttgttaatatagtca 463268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 8407259 - 8407219
Alignment:
Q  146 tagttccttaatgtatcaaaattttaaaatagtttttgatt 186  Q
    ||||| || ||||||||||||||||||||||||| ||||||    
T  8407259 tagtttctgaatgtatcaaaattttaaaatagttattgatt 8407219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 9023471 - 9023384
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||| ||||||||||| | || | |||||||||| | | ||||||||||||||| |||||||| ||||  || ||| |||||||||    
T  9023471 aatgtattaaaattttaaatt-gtctctgattgtacactttattagtcaaaatagtccctaacattcaaatacttcattgatattgtca 9023384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 22579572 - 22579500
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc 213  Q
    ||||||||| | | |||||||||||||||||||||| |   ||||| |||| | ||||| |||||||||||||    
T  22579572 cacaatagtccatcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaatagtctc 22579500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 32503549 - 32503486
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtt 228  Q
    |||| |||||||||||  |||||||||| | ||||| |||||||| ||| |||||||||||||||    
T  32503549 aaatcttaaaatagttcatgattgtacact-tgttaatcaaaatattctttaacattaaaatgtt 32503486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 34033230 - 34033265
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgt 188  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34033230 cttaatgtatcaaaatttt-aaatagtttttgattgt 34033265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 39194868 - 39194940
Alignment:
Q  171 aaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||  |||||||| || | ||||||||||||||||| ||  |||||||||||||  || |||||||||    
T  39194868 aaaatagtcattgattgtgcactttgttagtcaaaatagtcactgccattaaaatgtttcgttaatattgtca 39194940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 32743381 - 32743314
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||| | ||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  32743381 gtatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaataatctctgacattaaaat 32743314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 29795316 - 29795255
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||| |||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||    
T  29795316 ttaatatatcaaaattttaaaatagtatttgattgtgcactatgttaatcaaaatagtctct 29795255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 30050659 - 30050578
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||| |||||||||||| |||||| |||||||| | ||||| | || | |||||||||||||||||||| ||||||||||    
T  30050659 aatagtcccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaaaatagtctctcacattaaaat 30050578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 34177530 - 34177465
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttt 229  Q
    |||||| ||||||||   ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  34177530 aaatttcaaaatagtccatgattgtgcattatgttagtcaaaatagtctcttacattaaaatgttt 34177465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 8983972 - 8984059
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatatt 239  Q
    |||||| |||||||||||||||| | || || |   | ||||||||||||||||||||||||| ||||||||||||||| || |||||    
T  8983972 cttaatatatcaaaattttaaaacaattattaaccatgcattatgttagtcaaaatagtctcttacattaaaatgttttgttaatatt 8984059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 39162444 - 39162514
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||| | | |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||    
T  39162444 cacaatagtacttcaatgtattgaaatttcaaaatagtttttgattgcgcattatgttagtcaaaatagtc 39162514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 3450574 - 3450517
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||||||||||||||||||||| |||||||  |||| | ||||||||||||||    
T  3450574 ttaatgtatcaaaattttaaaatagttgttgattgaccattttattagtcaaaatagt 3450517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 14926315 - 14926392
Alignment:
Q  134 gagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||| |||||||||||  || ||||||| |||||||||||||||||  ||||||| || ||||||||||||| |||||    
T  14926315 gagtaggcacaatagtctctgaatgtatgaaaattttaaaatagttactgattgtgcactatgttagtcaaagtagtc 14926392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3728097 - 3728169
Alignment:
Q  169 ttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgt 241  Q
    ||||||||||   |||||||  |||||||||||||||||||||||| || ||||||| ||||||| |||||||    
T  3728097 ttaaaatagtccatgattgtgtattatgttagtcaaaatagtctcttacgttaaaatattttattaatattgt 3728169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 8234374 - 8234310
Alignment:
Q  150 tccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||| ||| |||||||||||||||||||||||| ||||| |||| ||||| |||||||| |||||    
T  8234374 tcctcaatatatcaaaattttaaaatagtttttaattgtgcattctgttaatcaaaataatctct 8234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 35607167 - 35607267
Alignment:
Q  126 tgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaat-agtttttgattgtacattatgttagtcaaaatagtctctaacattaaaa 224  Q
    ||||| |||||| | ||| ||||| ||||||| | ||||||||||||||| ||||||||||||| ||||  ||||||||||||| ||| | || ||||||    
T  35607167 tgtataacgagtagtcacgatagtcccttaatatgtcaaaattttaaaattagtttttgattgtgcatttcgttagtcaaaataatctatgacgttaaaa 35607266  T
Q  225 t 225  Q
    |    
T  35607267 t 35607267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 50155562 - 50155598
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtaca 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  50155562 aatgtatcaaaattttaaaatagtttttgattgtaca 50155598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 29795100 - 29795159
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||||||||||||||||||| |||||| ||||||| | | ||| |||||||||||    
T  29795100 cttaatgtatcaaaattttaaaatattttttggttgtacacttttttaatcaaaatagtc 29795159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 45679793 - 45679714
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttatt 233  Q
    |||||||| |||||||||||||||||  ||||||| || |  |||||||||||||||| ||||  ||||||| |||||||    
T  45679793 taatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttatt 45679714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 51849619 - 51849552
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||| ||| ||||||| |||||||||||||||||| |||||||||| |   |||||||||||||||    
T  51849619 aatagtccctgaatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaaatagtc 51849552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 28620443 - 28620481
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtt 179  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28620443 cacaatagttctttaatgtatcaaaattttaaaatagtt 28620481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 33747307 - 33747409
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattg 240  Q
    ||||||||||| | |||||||| |||||| |||| ||| ||||||| | || |  ||||||||||||||||||| | ||||||||| |  ||| ||||||    
T  33747307 cacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtctctgatattaaaatgctccattaatattg 33747406  T
Q  241 tca 243  Q
    |||    
T  33747407 tca 33747409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 8778994 - 8779063
Alignment:
Q  145 atagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||| ||| ||| ||||||||||| |||||||||| ||||||| || | ||||||| ||||||||||||    
T  8778994 atagtccctcaatatatcaaaatttcaaaatagtttctgattgtgcactttgttagttaaaatagtctct 8779063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 31134822 - 31134705
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| ||||||||| | |||||| | ||| ||||| ||  ||||||| ||||||  |||| |||  |||||||| || ||||||| ||||||||||    
T  31134822 attttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaattccaaaagagtgattgattgtgcactatgttaatcaaaatagt 31134723  T
Q  211 ctctaacattaaaatgtt 228  Q
    | || || ||||||||||    
T  31134722 ccctcacgttaaaatgtt 31134705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 39329975 - 39330044
Alignment:
Q  156 atgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||||| |   | ||| | |||||||||||||||||||||| |||||| ||||||    
T  39329975 atgtatcaaaattttaaaatattcactaattatgcattatgttagtcaaaatagtcactaacactaaaat 39330044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 45679522 - 45679615
Alignment:
Q  121 ctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||||||| | |||||| | ||||||| | | | || |||| |||||||||||||||||||||||||| || | | ||||||||||| ||||||    
T  45679522 ctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtttttgattgtgcactctattagtcaaaatggtctct 45679615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 46187393 - 46187336
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||| |||||||||||||||||| ||||||||||| || ||||||| | ||||||||    
T  46187393 ttaatatatcaaaattttaaaataatttttgattgtgcactatgttaattaaaatagt 46187336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 47922020 - 47921944
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacatta 221  Q
    ||||||| || ||||||| |||||||| |||| |||||||||||||||||   |||||||||||| || |||||||||    
T  47922020 aatagtttctcaatgtat-aaaatttttaaattgtttttgattgtacatttcattagtcaaaataatccctaacatta 47921944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 6450058 - 6450130
Alignment:
Q  154 taatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    ||||||||||||||| ||||||||||||  ||||| || ||  | |||||||||||||||| || ||||||||    
T  6450058 taatgtatcaaaattctaaaatagttttcaattgtgcactacttcagtcaaaatagtctctgacgttaaaatg 6450130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 19464253 - 19464337
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||| | | ||||||||||||||| ||||| || | |||||| ||| |  ||||||||||||||||||| ||| ||||||    
T  19464253 cacaatagtccttcaatgtatcaaaatttaaaaatggtctctgattgaacactccgttagtcaaaatagtctctgacactaaaat 19464337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 34826835 - 34826918
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||| | | |||||||||||||||||||||| |   ||||||| |||| |||||||||||||||||| | || |||||||    
T  34826835 cacaatagtccttcaatgtatcaaaattttaaaata-tcactgattgtgcattctgttagtcaaaatagtctttgacgttaaaat 34826918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 40193111 - 40193067
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    ||||||||||||||||||||||||  || ||||||||||||||||    
T  40193111 aaattttaaaatagtttttgattgcgcactatgttagtcaaaata 40193067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 16192298 - 16192259
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacatta 194  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  16192298 aatgtatcaaaattttaaaatagtttctgattgtgcatta 16192259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 38901753 - 38901669
Alignment:
Q  157 tgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||| |||||||| ||  ||||||||||  |||| |||||||||||| |  |||| |||||||| ||| |||||||||    
T  38901753 tgtatcaaaatttcaaaatagtctt--attgtacatttcgttaatcaaaatagtctttggcattgaaatgtttcattaatattgtca 38901669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 6728094 - 6727980
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||| || ||||||||| | |||| | | ||||||||| | | |||| |||||||||  |||||||| ||  ||||| || ||||||||||||||||||    
T  6728094 attttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtcttccattgtgcactatgttagtcaaaatagt 6727995  T
Q  211 ctctaacattaaaat 225  Q
    || | || |||||||    
T  6727994 ctttgactttaaaat 6727980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 27900658 - 27900728
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    ||||||||  |||||||||||||||||||||||||||   ||||||| || | |  |||||||||||||||    
T  27900658 acaatagtctcttaatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtcaaaatagtct 27900728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 37980463 - 37980405
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctc 213  Q
    |||||||||||||||||||||||| |||||||||  |  |||||| | |||||||||||    
T  37980463 aatgtatcaaaattttaaaatagtgtttgattgtggaccatgttaattaaaatagtctc 37980405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 8987490 - 8987417
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatg 226  Q
    |||||||||| |||||||||||||||| || ||  |  |||||||||| ||||||||| ||| || ||||||||    
T  8987490 ttaatgtatcgaaattttaaaatagttcttaatcatgtattatgttaggcaaaatagtttcttacgttaaaatg 8987417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 30050338 - 30050402
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaa 205  Q
    ||||||| ||| | ||||||||| |||||||||||||| | |||||||  ||| |||||||||||    
T  30050338 cacaataattcttcaatgtatcataattttaaaatagtctctgattgtgtattttgttagtcaaa 30050402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 34177333 - 34177385
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||||| ||||||||  |||||||| |||| ||||||||||| |||||    
T  34177333 tatcaaaatttcaaaatagtccttgattgtccattttgttagtcaaattagtc 34177385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 41363343 - 41363391
Alignment:
Q  172 aaatagtttttgattgtacattatgttagtcaaaatagtctctaacatt 220  Q
    |||| |||| |||||||||||| ||||||||||| || |||||||||||    
T  41363343 aaattgtttctgattgtacattttgttagtcaaattaatctctaacatt 41363391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 1052430 - 1052500
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaa 223  Q
    ||||||||||||||||||||||||||| || ||| |||| || |||| ||||||| |||||||||||||||    
T  1052430 ttaatgtatcaaaattttaaaatagttcttaattatacactacgttactcaaaattgtctctaacattaaa 1052500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 3116838 - 3116901
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaat 207  Q
    |||||||||| ||| |||||||||||||||||||||||| | ||| |||| |||||||||||||    
T  3116838 aatagttcctcaatatatcaaaattttaaaatagtttttaaatgtgcattttgttagtcaaaat 3116901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 40089896 - 40089801
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatca 248  Q
    |||||||||||||| | | |||||||||||||||||| ||| | | ||| |||||||||||||||| |||||| ||| ||| ||| ||||| ||||    
T  40089896 ttaatgtatcaaaactatcaaatagtttttgattgtatattttatcagttaaaatagtctctaacaataaaatatttcattaatactgtcatatca 40089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 46720111 - 46720016
Alignment:
Q  115 tggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||||||| || || ||| | ||||||||| ||| |||||||  |||||||||||| || ||||||||| || | ||||||||||||||||    
T  46720111 tggttcctgaatgaataacaagtagtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgtgcactttgttagtcaaaatagt 46720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 8929501 - 8929559
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    ||||||||| |||||||||||||||||||||||| | || | |||||||||||||||||    
T  8929501 ttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtc 8929559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 39608648 - 39608582
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaata 208  Q
    |||||||||  | |||||||||||||||||||||||||||  |||||||| | ||||||||||||||    
T  39608648 acaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtacaatttgttagtcaaaata 39608582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 5429564 - 5429508
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgtt 198  Q
    |||||| ||||| |||||||||||||||||||||||||  |||||||||| ||||||    
T  5429564 acaataattcctcaatgtatcaaaattttaaaatagttcctgattgtacactatgtt 5429508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 10228752 - 10228827
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgtttt 230  Q
    |||||||| |||||| |||||||| ||||||||| || |  ||||||||||||||||| | || ||||||||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgtttt 10228827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 16916277 - 16916360
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcat 236  Q
    |||||||| | ||||||||||||| | |||||||||| |||||||| || |||||||| ||  | ||||||||||| |||||||    
T  16916277 ttaatgtaccgaaattttaaaataatctttgattgtatattatgttggttaaaatagtttcagatattaaaatgttatattcat 16916360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 46719828 - 46719879
Alignment:
Q  163 aaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||| |||||||||| ||||||| |||||||||| ||||||||||||||    
T  46719828 aaaatttcaaaatagtttctgattgtgcattatgttaatcaaaatagtctct 46719879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 1247507 - 1247573
Alignment:
Q  112 ttttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagt 178  Q
    ||||||| ||||||| | | |||||| | |||||||||| |||||||||| ||||||||||||||||    
T  1247507 ttttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagt 1247573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 14669565 - 14669495
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||  || |||||||||||||| |||||||||| |||||||| || | ||||||||||| |||||    
T  14669565 cacaatagtctctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagtc 14669495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 27233676 - 27233730
Alignment:
Q  162 caaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaa 216  Q
    ||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  27233676 caaaattataaaatagtccttaattatacattatgttagtcaaaatagtctctaa 27233730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 27376537 - 27376471
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||| ||||||||||| |||||||  | ||||||||||||||| ||||| ||| |||||||    
T  27376537 tatcaaaattctaaaatagtttctgattgtgtactatgttagtcaaaatggtctccaacgttaaaat 27376471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 38838744 - 38838646
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||||| ||||||||| | |||||| | ||||||| |   | ||||||| |||||||||||||||| | ||||| | |||| |||||||||||||||    
T  38838744 attttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaatag 38838646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 41707337 - 41707267
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||| |||| |||||||||||  ||||||| |||  ||||||||||||||||||||| ||| ||||    
T  41707337 aatgtatcagaattctaaaatagtttaagattgtaaatttggttagtcaaaatagtctctaaaattgaaat 41707267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 18942789 - 18942860
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgat--tgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||||||||||| | ||||||  ||| ||||  ||||||| ||||||||||||||||||||||    
T  18942789 aatgtatcaaaattttaaaata-tctttgatcatgtgcatttcgttagtccaaatagtctctaacattaaaat 18942860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 27080797 - 27080877
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||| ||||||||||| |||| ||| ||| ||||||||| || || | ||||||||||||||  ||||||||||||    
T  27080797 aatagttcctcaatgtatcaaattttttaaa-agtctttgattgtgcactacgctagtcaaaatagtccataacattaaaat 27080877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 27197504 - 27197424
Alignment:
Q  144 aatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||| ||||||||||| |||| ||| ||| ||||||||| || || | ||||||||||||||  ||||||||||||    
T  27197504 aatagttcctcaatgtatcaaattttttaaa-agtctttgattgtgcactacgctagtcaaaatagtccataacattaaaat 27197424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 29197216 - 29197151
Alignment:
Q  149 ttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||| |||| ||||||||||||||||||||||||||||| || | ||||| ||||| ||| ||||    
T  29197216 ttcctcaatgcatcaaaattttaaaatagtttttgattgtgcactctgttaatcaaagtagcctct 29197151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 30792908 - 30792984
Alignment:
Q  171 aaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatca 248  Q
    |||||||||||||||||| || |||||||||||||||||| | | ||| |||||| |||| || ||||||||| ||||    
T  30792908 aaaatagtttttgattgtgcactatgttagtcaaaatagt-ttttacaataaaatattttgttaatattgtcacatca 30792984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 45540091 - 45539990
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatc-aaaattttaaaatagtttttgattgtacattatgttagtcaaaatag 209  Q
    |||||||| ||| ||||||| |||||| | ||||||||| ||| |||||||| ||||| | || |||||| |||||| | |||| ||||| |||||||||    
T  45540091 attttggtccctaaatgtataacgagttgacacaatagtccctaaatgtatcaaaaatctcaagatagttattgattttgcattttgttaatcaaaatag 45539992  T
Q  210 tc 211  Q
    ||    
T  45539991 tc 45539990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 19303656 - 19303525
Alignment:
Q  111 attttggttcctgaatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||  |||||||||| | |||||| ||||||||  ||| |||||||||||||||||||||| |  |||||| |  | |  ||||||||||||| |    
T  19303656 attttggtctctgaatgtataaggagtggccacaatagc-cctcaatgtatcaaaattttaaaatactcattgattattaacttcgttagtcaaaataat 19303558  T
Q  211 ctctaacattaaaatgttttattcatattgtca 243  Q
    |  |||||||| ||| |||| || |||||||||    
T  19303557 cattaacattagaatattttgttaatattgtca 19303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 23457610 - 23457685
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatatt 239  Q
    ||||||||||||||| | ||||| | ||||||||||||| ||||| | | |||||||||||| ||| ||| |||||    
T  23457610 aaattttaaaatagtctatgattatgcattatgttagtctaaataatttataacattaaaatatttcattaatatt 23457685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 23457869 - 23457814
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| |||||||||||||||| |||||||| || | ||||| ||||||||||    
T  23457869 aatgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaatagt 23457814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 23474559 - 23474614
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    ||||||||||||||||||||||||| |||||||| || |  |||| ||||||||||    
T  23474559 aatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagt 23474614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 25618211 - 25618160
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaa 206  Q
    ||||||| |||||||||||||||||| ||||| | |||| ||||||||||||    
T  25618211 aatgtattaaaattttaaaatagtttatgattttgcattttgttagtcaaaa 25618160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 34703650 - 34703768
Alignment:
Q  124 aatgtatgacgagtgggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaa 223  Q
    ||||||| |||||| | ||||||||| | | ||||||||||| |||||||||||| | | ||||| || |  |||  ||||||||||||||||| |||||    
T  34703650 aatgtataacgagtagtcacaatagtccatcaatgtatcaaa-ttttaaaatagtctctaattgttcacttcgttgatcaaaatagtctctaactttaaa 34703748  T
Q  224 atgttttattcatattgtca 243  Q
    || |||| |  |||||||||    
T  34703749 atattttgtcaatattgtca 34703768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 2980173 - 2980235
Alignment:
Q  163 aaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    |||||||||||||| | || |||| ||||||||||||||||||||| || |  ||||||||||    
T  2980173 aaaattttaaaataatcttcgattatacattatgttagtcaaaatattcaccgacattaaaat 2980235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 6983313 - 6983415
Alignment:
Q  141 cacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattg 240  Q
    ||||||||| | | |||| |||||||||||||| ||||    |||||| ||||||||||||||||||| | | | |||||||||| |||  || ||||||    
T  6983313 cacaatagtccttcaatgaatcaaaattttaaagtagtccccgattgtgcattatgttagtcaaaataatatttcacattaaaatatttcgttaatattg 6983412  T
Q  241 tca 243  Q
    |||    
T  6983413 tca 6983415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 32996569 - 32996499
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtct 212  Q
    |||||||| ||| |||| ||||||||| ||||||||| | ||||||| || | ||||| ||||||||||||    
T  32996569 acaatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtct 32996499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 41870545 - 41870631
Alignment:
Q  195 tgttagtcaaaatagtctctaacattaaaatgttttattcatattgtcaaatcaa-aatttcaat-tatttacttgttgtcatatca 279  Q
    |||||||||||| |||||| || |||||||||||| | | ||||||||| ||||| | ||| ||| ||||||||| |||||||||||    
T  41870545 tgttagtcaaaacagtctccaatattaaaatgtttcactaatattgtcatatcaatacttttaatatatttacttattgtcatatca 41870631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 3399929 - 3399990
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    |||||||||| |||||| |||||| | | |||||||  ||||||| ||||||||||||||||    
T  3399929 ttaatgtatcgaaatttgaaaataatctctgattgtgaattatgtgagtcaaaatagtctct 3399990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 8062749 - 8062831
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||||||||||||||||  ||||||| || ||  | ||||||||||||||  ||||||||||||  ||| || |||||||||    
T  8062749 tatcaaaattttaaaatagtcattgattgcacttt--gctagtcaaaatagtccataacattaaaataatttgttaatattgtca 8062831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 40077710 - 40077633
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgt 241  Q
    ||||||||||||| | | | |||||| ||| | ||| | ||||||||||||||||||||||| |||| || |||||||    
T  40077710 aaattttaaaataatatctaattgtatattttattaattaaaatagtctctaacattaaaatattttgttaatattgt 40077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 5358246 - 5358314
Alignment:
Q  142 acaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagt 210  Q
    |||||||| | | |||||||||||||||||||||||| | |||||||  | | | ||||||||||||||    
T  5358246 acaatagtccttcaatgtatcaaaattttaaaatagtctctgattgtgtactctattagtcaaaatagt 5358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 14239772 - 14239844
Alignment:
Q  139 ggcacaatagttccttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||  ||||||||||| |||||| |||||  |  || |||||||| ||| |||||||||||||||    
T  14239772 ggcacaatagtcacttaatgtatcgaaatttaaaaattatccttaattgtacaatatattagtcaaaatagtc 14239844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 40355115 - 40355055
Alignment:
Q  164 aaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaa 224  Q
    |||||| |||||||| | ||||||| || |||||||||||||||||||  | |||||||||    
T  40355115 aaatttgaaaatagtctctgattgtgcactatgttagtcaaaatagtcatttacattaaaa 40355055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 43510275 - 43510327
Alignment:
Q  159 tatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||||||||||| ||||||  |||| ||||| |||| ||||||||    
T  43510275 tatcaaaattttaaaatagtatttgatcctacactatgtcagtctaaatagtc 43510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 82875 - 82947
Alignment:
Q  153 ttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||| |||||||||| ||||||||| | |||||||| ||| ||||| ||||||||||||||||| |||||||    
T  82875 ttaatatatcaaaattctaaaatagtatctgattgtatattttgttaatcaaaatagtctctaacgttaaaat 82947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 328817 - 328905
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    |||||||| ||||||||||||| | |||||| ||||| | ||| ||||||||| |||||  ||||||||||||||| || |||||||||    
T  328817 aatgtatcgaaattttaaaataatctttgatggtacaatttgtcagtcaaaatcgtctccgacattaaaatgttttgttgatattgtca 328905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 329093 - 329031
Alignment:
Q  152 cttaatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctct 214  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | |||||||| ||||| |||||    
T  329093 cttaatgtatcaaaattataaaatagtttctgattatacactttgttagtctaaatactctct 329031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 17142 - 17211
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaat 225  Q
    ||||||||||||||||||| | || ||||||||||||    ||||||||||||||||  ||||||||||||    
T  17142 aatgtatcaaaattttaaatt-gtctttgattgtacacagcgttagtcaaaatagtccataacattaaaat 17211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 29235 - 29288
Alignment:
Q  158 gtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtc 211  Q
    |||||||||||| ||||||||| |||||||| || | | |||||||||||||||    
T  29235 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagtc 29288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 20037 - 20124
Alignment:
Q  155 aatgtatcaaaattttaaaatagtttttgattgtacattatgttagtcaaaatagtctctaacattaaaatgttttattcatattgtca 243  Q
    ||||||| ||||||||||| | || | |||||||||| |   |||||||||||||||||||||||| ||||  || ||| |||||||||    
T  20037 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttcattgatattgtca 20124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University