View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_31 (Length: 298)
Name: NF18444_low_31
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 6236638 - 6236932
Alignment:
| Q |
4 |
gggtggtgagatcctccattgagaagagaaggtaggtaaactcttcgtatttttcaccatagcgtcagcagctgcattcccttcccggtgtatgtgagag |
103 |
Q |
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| T |
6236638 |
gggtggtgagatcctccattgagaagagaaggtaggtaaactcttcgtatttttcgccatagcgtcagcagctgcattcccttcccggtgtatgtgagag |
6236737 |
T |
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| Q |
104 |
caaacacaactgagactttagatatttagataggtgaaaatctaatcaaaaattaaaatgtttgatgaatttagatannnnnnnnaaacatataaacttg |
203 |
Q |
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| T |
6236738 |
caaacacaagtgagactttagatatttagataggtgaaaatctaatcaaaaattaaaatgtttgatgaatttagatattttttttaaacatataaacttg |
6236837 |
T |
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| Q |
204 |
tgttctgaattaaagaaagtgattatcatctcaactaagttggcagtacaacaacacaaaatcgaacgaccaaaaatattttaataattgttgaa |
298 |
Q |
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| T |
6236838 |
tgttctgaattaaagaaagtgattatcatctcaactaagttggcagtacaacaacacaaaaccgaacgaccaaaaatattttaataattgttgaa |
6236932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 33891819 - 33891693
Alignment:
| Q |
136 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat-annnnnnnnaaacatataaacttgtgttctgaattaaagaaagtgattatca |
231 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||| |
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| T |
33891819 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagattattattttttaatatataaatttgtgttctgaaacaaagaaagtgattgtca |
33891720 |
T |
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| Q |
232 |
tctcaactaagttggcagtacaacaac |
258 |
Q |
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| T |
33891719 |
tctcaattaaattggcaacacaacaac |
33891693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 33952429 - 33952555
Alignment:
| Q |
136 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat-annnnnnnnaaacatataaacttgtgttctgaattaaagaaagtgattatca |
231 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||| |
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| T |
33952429 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagattattattttttaatatataaatttgtgttctgaaacaaagaaagtgattgtca |
33952528 |
T |
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| Q |
232 |
tctcaactaagttggcagtacaacaac |
258 |
Q |
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| T |
33952529 |
tctcaattaaattggcaacacaacaac |
33952555 |
T |
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