View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_33 (Length: 296)
Name: NF18444_low_33
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 341596 - 341319
Alignment:
| Q |
14 |
agacacgaattaagaaacatatgtctaatggcatggataattggttggggagtcctttggtgaatgtgttagaatatttcaatcaatttttatca--gag |
111 |
Q |
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| T |
341596 |
agacacgaattaagaaacatatgtctaatggcatggataattggttggggtgtcctttggtgaatgtgtt-gaatatttcaatcaatttgtatcatagag |
341498 |
T |
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| Q |
112 |
taaaagcagcgttatccctagtgtcattcttcatcataatgtgtttcttgagaaataaagttgttggagtcgtccttccctcttctttcacttaagattg |
211 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
341497 |
taaaagcagtgttatccctagtgtcattcttcatcataatgtgtttcttgagaaataaagttgttggagtcgtccttccctcttctctcgcttaagattg |
341398 |
T |
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| Q |
212 |
tttatttatgtgatgcttaattgttgtact---------actcgaaaattattacttgttagaatggttcacatttttc |
281 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
341397 |
tttatttatgtgatgcttaattgttgtactactcctaagactcgaaaattattacttgttagaatggttcacatttttc |
341319 |
T |
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