View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_34 (Length: 293)
Name: NF18444_low_34
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 36151144 - 36150877
Alignment:
| Q |
22 |
ccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
121 |
Q |
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| T |
36151144 |
ccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
36151045 |
T |
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| Q |
122 |
gaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgttggaacaagtggaactgtgcttaa |
221 |
Q |
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| T |
36151044 |
gaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagctggtgttgttggaacaagtggaactgtgcttaa |
36150945 |
T |
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| Q |
222 |
tcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtg |
289 |
Q |
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| T |
36150944 |
tcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtg |
36150877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 36154532 - 36154263
Alignment:
| Q |
20 |
ctccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttt |
119 |
Q |
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| T |
36154532 |
ctccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttt |
36154433 |
T |
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| Q |
120 |
ttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgttggaacaagtggaactgtgctt |
219 |
Q |
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| T |
36154432 |
ttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgttggaacaagcggaactgtactt |
36154333 |
T |
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| Q |
220 |
aatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtg |
289 |
Q |
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| T |
36154332 |
aatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaagggtg |
36154263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 5273616 - 5273544
Alignment:
| Q |
49 |
tgtgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
121 |
Q |
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|||||||||||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||||| |
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| T |
5273616 |
tgtgagttgagttggtttattaactgagttgttttgagaagacgaatgagaactgagaatctttttgcttttt |
5273544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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