View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_42 (Length: 268)
Name: NF18444_low_42
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 33287110 - 33286868
Alignment:
| Q |
18 |
ctttggacatgcatttaatgaacatcatgataagaaggttgctcctttctttcatctttgctctcgccttgagattcataaagttgatggaaaaatccca |
117 |
Q |
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| T |
33287110 |
ctttgaacatgcatttaatgaacatcat---aagaaggttgctccttcctttcatctttgctctcaccttgagattcataaagttgctggaaaaatccca |
33287014 |
T |
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| Q |
118 |
gattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccatgatgaggataagacttattaatggtgagcattag |
217 |
Q |
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| T |
33287013 |
gattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccatgatgaggataagacttattaatggtgagcattag |
33286914 |
T |
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| Q |
218 |
cattggagtgttgctatgtgttatgttcaattgttgcatattcttc |
263 |
Q |
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| T |
33286913 |
cattggagtgttgctatgtgttatgttcaattgttgcattttcttc |
33286868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 33141043 - 33141158
Alignment:
| Q |
68 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
167 |
Q |
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| T |
33141043 |
ttcatatttgctctcaccttgagattcctaatgttgctgggaaaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattag |
33141142 |
T |
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| Q |
168 |
ctacaagtgttgccat |
183 |
Q |
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| T |
33141143 |
ctacaagtgttgccat |
33141158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 33159663 - 33159778
Alignment:
| Q |
68 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
167 |
Q |
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| T |
33159663 |
ttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcag |
33159762 |
T |
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| Q |
168 |
ctacaagtgttgccat |
183 |
Q |
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| T |
33159763 |
ctacaagtgctgccat |
33159778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 33182507 - 33182622
Alignment:
| Q |
68 |
ttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattac |
167 |
Q |
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| T |
33182507 |
ttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcag |
33182606 |
T |
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| Q |
168 |
ctacaagtgttgccat |
183 |
Q |
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||||||||| |||||| |
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| T |
33182607 |
ctacaagtgctgccat |
33182622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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