View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_low_43 (Length: 255)

Name: NF18444_low_43
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_low_43
NF18444_low_43
[»] chr4 (8 HSPs)
chr4 (1-244)||(27463316-27463569)
chr4 (111-244)||(18988030-18988163)
chr4 (1-82)||(27483925-27484006)
chr4 (1-82)||(27472095-27472176)
chr4 (175-244)||(27483688-27483756)
chr4 (1-82)||(27519388-27519469)
chr4 (161-243)||(27519626-27519707)
chr4 (215-244)||(27471915-27471944)
[»] chr5 (4 HSPs)
chr5 (130-244)||(29169634-29169747)
chr5 (131-235)||(1759124-1759231)
chr5 (121-241)||(38866654-38866776)
chr5 (130-189)||(38157695-38157753)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27463569 - 27463316
Alignment:
Q  1 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagtaagctgtgtcaataataacgtcgcaaacccaactgt------------ct 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  27463569 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagtaagctgtgtcaataataacgtcgcaaacccaactgtgcagtcaactgtct 27463470  T
Q  89 aaagggaactagtaatgcttacttcacaaggcattaaactgatagatggtataaaaataatttcattcattaagttcaaagaatgtttgagatagtacat 188  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  27463469 aaagg-aactagtaatgcttacttcacaaggaattgaactgatagatggtataaaaataatttcattcattatgttcaaagaatg-ttgagatagtacat 27463372  T
Q  189 accaacttatttacaaaacaaatgtaaaggatctacaaatatagattggttcttct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27463371 accaacttatttacaaaacaaatgtaaaggatctacaaatatagactggttcttct 27463316  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 18988163 - 18988030
Alignment:
Q  111 ttcacaaggcattaaactgatagatgg-tataaaaataatttcattcattaagttcaaagaatgtttgagatagtacataccaacttatttacaaaacaa 209  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  18988163 ttcacaaggcattgaactgatagatgggtataaaaatactttcattcattaagttcaaagaatgtt-gagatagtatataccaacttatttacaaaacaa 18988065  T
Q  210 atgtaaaggatctacaaatatagattggttcttct 244  Q
    |||||| ||||||||||||||||||||||||||||    
T  18988064 atgtaagggatctacaaatatagattggttcttct 18988030  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27484006 - 27483925
Alignment:
Q  1 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagtaagctgtgtcaataataacgtcgcaaacccaa 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27484006 ggttttatgttgacacatgtaaatttaggttttgtatttgctaaggtagtaagctgtgtcaataataacgtcgcaaacccaa 27483925  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27472176 - 27472095
Alignment:
Q  1 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagtaagctgtgtcaataataacgtcgcaaacccaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  27472176 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagtaagctgtctcaataataacattgcaaacccaa 27472095  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 27483756 - 27483688
Alignment:
Q  175 ttgagatagtacataccaacttatttacaaaacaaatgtaaaggatctacaaatatagattggttcttct 244  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27483756 ttgagatagtacataccaacttatttacaaaacaaatgt-aaggatctacaaatatagattggttcttct 27483688  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27519388 - 27519469
Alignment:
Q  1 ggttttatgttgacacatgtaaatttaggttttgtacttgctaaggtagt-aagctgtgtcaataataacgtcgcaaacccaa 82  Q
    |||||||||||| || ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  27519388 ggttttatgttg-cagatgtaaatttaggttttgtacttgctaatttagtaaagctgtgtcaataataacgttgcaaatccaa 27519469  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 27519626 - 27519707
Alignment:
Q  161 agttcaaagaatgtttgagatagtacataccaacttatttacaaaacaaatgtaaaggatctacaaatatagattggttcttc 243  Q
    ||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||    
T  27519626 agttctaagaatgtt-gaggtagtatataccaacttatttaaaaaacaaatgtaagggttctacaaatataggttggttcttc 27519707  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 27471944 - 27471915
Alignment:
Q  215 aaggatctacaaatatagattggttcttct 244  Q
    ||||||||||||||||||||||||||||||    
T  27471944 aaggatctacaaatatagattggttcttct 27471915  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 29169747 - 29169634
Alignment:
Q  130 atagatggtataaaaataatttcattcattaagttcaaagaatgtttgagatagtacataccaacttatttacaaaacaaatgtaaaggatctacaaata 229  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||    
T  29169747 atagatgttataaaaatactttcattcattaagttcaaagaatgtt-gagatagtacatatcaagttatttacaaaacaaatgtaagggatgtacaaata 29169649  T
Q  230 tagattggttcttct 244  Q
    || ||||||||||||    
T  29169648 taaattggttcttct 29169634  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 1759231 - 1759124
Alignment:
Q  131 tagatggtataaaaataattt----cattcattaagttcaaagaatgtttgagatagtacataccaacttatttacaaaacaaatgtaaaggatctacaa 226  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  1759231 tagatggtataaaaatactttgattcattcattaagttcaaagaatgtt-gagatagtacataccaacttatttacaaaacaaatgtaagggatctagaa 1759133  T
Q  227 atatagatt 235  Q
    |||||||||    
T  1759132 atatagatt 1759124  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 38866654 - 38866776
Alignment:
Q  121 attaaactgatagatggtataaaaataatttcattcat----taagttcaaagaatgtttgagatagtacataccaacttatttacaaaacaaatgtaaa 216  Q
    |||| |||||||||||||||||||||| ||||||||||    | ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||     
T  38866654 attatactgatagatggtataaaaatactttcattcattgagtgagttcaaagaatg-ttgaaatagtacataccaacttatttacaaaa-aaatgtaag 38866751  T
Q  217 ggatctacaaatatagattggttct 241  Q
    |||| |||||||||| |||||||||    
T  38866752 ggatgtacaaatataaattggttct 38866776  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 38157753 - 38157695
Alignment:
Q  130 atagatggtataaaaataatttcattcattaagttcaaagaatgtttgagatagtacata 189  Q
    |||||||||||||||||| |||||||||||   ||||||||||| |||||||||| ||||    
T  38157753 atagatggtataaaaatactttcattcatttcattcaaagaatg-ttgagatagtccata 38157695  T

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