View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_low_48 (Length: 236)

Name: NF18444_low_48
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_low_48
NF18444_low_48
[»] chr2 (4 HSPs)
chr2 (3-128)||(26510935-26511060)
chr2 (7-80)||(26511693-26511766)
chr2 (25-81)||(14815333-14815387)
chr2 (156-201)||(26510864-26510909)
[»] chr5 (5 HSPs)
chr5 (4-124)||(19827915-19828035)
chr5 (6-90)||(23136813-23136897)
chr5 (3-124)||(19831854-19831975)
chr5 (3-89)||(35891927-35892013)
chr5 (31-120)||(14575277-14575366)
[»] chr8 (3 HSPs)
chr8 (3-90)||(8085442-8085529)
chr8 (26-90)||(33136808-33136872)
chr8 (6-124)||(7000653-7000771)
[»] chr6 (3 HSPs)
chr6 (3-127)||(10457982-10458106)
chr6 (3-79)||(32056583-32056659)
chr6 (3-87)||(6421591-6421675)
[»] chr3 (3 HSPs)
chr3 (3-124)||(6761836-6761957)
chr3 (26-87)||(53114358-53114419)
chr3 (60-88)||(1537962-1537990)
[»] chr4 (8 HSPs)
chr4 (26-126)||(41982695-41982795)
chr4 (3-87)||(20447190-20447273)
chr4 (8-83)||(20445895-20445970)
chr4 (25-95)||(46867485-46867554)
chr4 (45-124)||(32839085-32839164)
chr4 (3-86)||(51537309-51537392)
chr4 (3-90)||(46868846-46868933)
chr4 (3-86)||(51538004-51538087)
[»] chr1 (4 HSPs)
chr1 (3-79)||(12659164-12659240)
chr1 (57-124)||(12664408-12664475)
chr1 (3-124)||(12657805-12657929)
chr1 (3-95)||(12664068-12664160)
[»] chr7 (5 HSPs)
chr7 (53-90)||(30335102-30335139)
chr7 (3-90)||(47304172-47304259)
chr7 (4-70)||(20268323-20268389)
chr7 (35-77)||(30332378-30332420)
chr7 (39-79)||(5987840-5987880)
[»] scaffold0426 (1 HSPs)
scaffold0426 (9-87)||(3461-3539)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 26511060 - 26510935
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 102  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26511060 taagataaataatttagggatcgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatatgatgatctag 26510961  T
Q  103 aaatttgtaatgattttcattttaag 128  Q
    ||||||||||||||||||||||||||    
T  26510960 aaatttgtaatgattttcattttaag 26510935  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 26511693 - 26511766
Alignment:
Q  7 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattc 80  Q
    |||||||||  || |||||||||||| |||  | ||||||||||  ||||||||| ||||||||||||||||||    
T  26511693 ataaataattcagagattgatttgatggtgggtgacataattcagagaccatcttaatttttaatgaataattc 26511766  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 14815387 - 14815333
Alignment:
Q  25 gatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattca 81  Q
    ||||||||||||| | |||||| |||  |||||||||||||||| ||||||||||||    
T  14815387 gatttgatagtgagtgacataactca--gaccatcttgatttttcatgaataattca 14815333  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 26510909 - 26510864
Alignment:
Q  156 ttttcaatcaatttcgttcctaaatatgtggtatatgagctggcaa 201  Q
    ||||| ||||||||||| ||||||||| ||||||||||| ||||||    
T  26510909 ttttcgatcaatttcgtccctaaatatatggtatatgagttggcaa 26510864  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 19828035 - 19827915
Alignment:
Q  4 aagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctaga 103  Q
    |||||||||||| || | || ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |||   | ||      
T  19828035 aagataaataatttaagaatcgatttgatattgagtgacataattcatggaccatcttgatttttaatgaataatttagggatcgatttgacagtgtaac 19827936  T
Q  104 aatttgtaatgattttcattt 124  Q
    |||||||||||| ||||||||    
T  19827935 aatttgtaatgactttcattt 19827915  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 23136897 - 23136813
Alignment:
Q  6 gataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgat 90  Q
    ||||||||||| ||||||  |||||||||||| | |||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  23136897 gataaataatacagggatcaatttgatagtgagtgacataattcatgaaccaacttgatttttaatgaataattcagagatcgat 23136813  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 19831854 - 19831975
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 102  Q
    |||||||||||||  |  ||| ||||||||||||| | ||||||||||  ||||||||||||||||||| ||||||||| ||||| || |||  || ||     
T  19831854 taagataaataattcaatgatcgatttgatagtgattgacataattcacagaccatcttgatttttaattaataattcaaggatcaatttgacaatgtaa 19831953  T
Q  103 aaatttgtaatgattttcattt 124  Q
     |||||||||||| ||||||||    
T  19831954 caatttgtaatgactttcattt 19831975  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 35891927 - 35892013
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcga 89  Q
    |||||||||||||  |  ||| ||||||||||||  | |||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  35891927 taagataaataattcatagatagatttgatagtgggtgacataattcaagaaccaacttgatttttaatgaataatttagggatcga 35892013  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 14575366 - 14575277
Alignment:
Q  31 atagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttc 120  Q
    ||||||| | |||||||||||| |||| ||||||||||||||||||||| |||||| ||| |||  || ||  |||||||||||| ||||    
T  14575366 atagtgagtgacataattcatgaaccaacttgatttttaatgaataatttagggattgatttgacaatgtaacaatttgtaatgactttc 14575277  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 8085529 - 8085442
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgat 90  Q
    ||||||||||||| ||  ||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  8085529 taagataaataatttaatgatcgatttgatagtgagtgacataattcatggaccatcttgatttttaatgagtaatccagtgatcgat 8085442  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 33136872 - 33136808
Alignment:
Q  26 atttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgat 90  Q
    ||||||||| || | |||||||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  33136872 atttgatagcgagtgacataattcaaggacgatcttgattttcaatgaataatttagggatcgat 33136808  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 7000771 - 7000653
Alignment:
Q  6 gataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaa 105  Q
    ||||||||||  || ||| ||||||||| | | | |||||||||| |||||| |||||||||||| |||||||| || ||| ||| |||| || ||  ||    
T  7000771 gataaataattcagagatcgatttgatattaagtgacataattcaaggaccaacttgatttttaaggaataatttagagattgatttgataatgtaccaa 7000672  T
Q  106 tttgtaatgattttcattt 124  Q
    ||| |||||| ||| ||||    
T  7000671 tttataatgactttaattt 7000653  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 10457982 - 10458106
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 102  Q
    ||||||||||||| ||||||| ||||||||| ||| | |||||||||| |||||| ||| |||||||||||||||||||  ||||||| |||   | ||     
T  10457982 taagataaataatttagggatcgatttgataatgagtgacataattcagggaccaacttcatttttaatgaataattcaacgatcgatttgacagtgtaa 10458081  T
Q  103 aaatttgtaatgattttcattttaa 127  Q
     |||||||||||| |||| ||||||    
T  10458082 caatttgtaatgactttcgttttaa 10458106  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 32056583 - 32056659
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 79  Q
    |||||||||||||  || |||| |||||||||||| | |||||||| | ||| ||||||||||||||||||||||||    
T  32056583 taagataaataattcagagattaatttgatagtgagtgacataatttagggatcatcttgatttttaatgaataatt 32056659  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 6421675 - 6421591
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatc 87  Q
    ||||||||||||| ||||||| ||||||||||||| | ||||||||||   || | ||||||||| |||||||||| || |||||    
T  6421675 taagataaataatttagggatcgatttgatagtgagtgacataattcagacactaacttgattttgaatgaataatccaaggatc 6421591  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 6761836 - 6761957
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 102  Q
    |||||||||||||  | |||||||||| | ||||| |||||||||||| ||||||  ||| |||||||||||||||| ||||||| || |||   ||||     
T  6761836 taagataaataattcaaggattgatttaacagtgagtaacataattcagggaccaatttggtttttaatgaataatttagggatcaatttgaccgtctaa 6761935  T
Q  103 aaatttgtaatgattttcattt 124  Q
     |||||||||||| ||||||||    
T  6761936 caatttgtaatgactttcattt 6761957  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 53114358 - 53114419
Alignment:
Q  26 atttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatc 87  Q
    |||| ||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  53114358 atttcatagtgagtgacataattcatggaccagcttgatttttaatgaataatttagggatc 53114419  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 1537962 - 1537990
Alignment:
Q  60 ttgatttttaatgaataattcagggatcg 88  Q
    |||||||||||||||||||||||||||||    
T  1537962 ttgatttttaatgaataattcagggatcg 1537990  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 41982695 - 41982795
Alignment:
Q  26 atttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcatttt 125  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |  ||||||| ||||  | ||  |||||||||||| ||| |||||    
T  41982695 atttgatagtgagttacataattcatggaccaacttgatttttaatgaataatttaaagatcgatttgatagtgtaacaatttgtaatgacttttatttt 41982794  T
Q  126 a 126  Q
    |    
T  41982795 a 41982795  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 20447190 - 20447273
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatc 87  Q
    |||||||||||||  ||||||  |||||||||||| | || |||||||||||||| ||||||||||||||||||| ||| |||||    
T  20447190 taagataaataattcagggatcaatttgatagtgagtgac-taattcatggaccaacttgatttttaatgaataaatcaaggatc 20447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 20445970 - 20445895
Alignment:
Q  8 taaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagg 83  Q
    |||||||| ||| ||||||||||||||| | | |||||||||| |||||  ||||||||||||| |||||||||||    
T  20445970 taaataatttagagattgatttgatagtcattgacataattcagggacctgcttgatttttaatcaataattcagg 20445895  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 46867554 - 46867485
Alignment:
Q  25 gatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgat 95  Q
    ||||||||||||| | |||||||| | |||||| ||||||||||||||||||||||| |||||||| ||||    
T  46867554 gatttgatagtgagtgacataattta-ggaccaacttgatttttaatgaataattcaaggatcgatttgat 46867485  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 32839085 - 32839164
Alignment:
Q  45 aattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 124  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||  |||  || ||  |||||||||||| ||||||||    
T  32839085 aattcaaggaccatcttgattcttagtgaataattcagggatcgacttgacaatgtaacaatttgtaatgactttcattt 32839164  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 51537392 - 51537309
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggat 86  Q
    |||||||||||||  || ||| ||||||||||||| | ||||||| || |||| | ||| |||||||||||||| |||||||||    
T  51537392 taagataaataattaagtgatcgatttgatagtgagtgacataatccagggactaacttaatttttaatgaatagttcagggat 51537309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 46868846 - 46868933
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgat 90  Q
    |||||||||||||  |  ||| ||||||| ||||| | ||||| ||||  ||||| |||||||||||||||||||||||  |||||||    
T  46868846 taagataaataattcattgatcgatttgacagtgagtgacatatttcaatgaccaacttgatttttaatgaataattcaatgatcgat 46868933  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 51538004 - 51538087
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggat 86  Q
    |||||||||||||  | |||| ||||||||| ||| | |||||||||| |||||| ||  || |||||||||||||||| ||||    
T  51538004 taagataaataattcatggatcgatttgataatgagtgacataattcagggaccaactcaatctttaatgaataattcaaggat 51538087  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 12659164 - 12659240
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 79  Q
    |||||||||||||  || |||||||||||||| ||   |||||||||| |||||||||||||||||| |||||||||    
T  12659164 taagataaataattcagagattgatttgatagggagagacataattcaaggaccatcttgatttttagtgaataatt 12659240  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 12664408 - 12664475
Alignment:
Q  57 atcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 124  Q
    ||||||||||||||||||||||||| |||||||| |||  || ||  |||||||||||| ||||||||    
T  12664408 atcttgatttttaatgaataattcaaggatcgatgtgacaatgtaataatttgtaatgaatttcattt 12664475  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 12657929 - 12657805
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataac----ataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgat 98  Q
    |||||||||||||  |||||| ||||||||||||| | ||    |||||||| |||| ||||||| |||||||||||||| ||||||| ||| |||  ||    
T  12657929 taagataaataattcagggatcgatttgatagtgagtgacatatataattcaaggacaatcttga-ttttaatgaataatccagggattgatttgacaat 12657831  T
Q  99 ctagaaatttgtaatgattttcattt 124  Q
     ||  |||||||||| | ||||||||    
T  12657830 ataataatttgtaattactttcattt 12657805  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 12664160 - 12664068
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgat 95  Q
    |||||||||||||  | ||||  |||| ||||||  | |||||||||| ||||||| || ||||||||||||||||||| |||| ||| ||||    
T  12664160 taagataaataattcatggatcaatttaatagtgtgtgacataattcaaggaccattttaatttttaatgaataattcaaggattgatttgat 12664068  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 30335102 - 30335139
Alignment:
Q  53 gaccatcttgatttttaatgaataattcagggatcgat 90  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30335102 gaccatcttgatttttaatgaataattcagggatcgat 30335139  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 47304172 - 47304259
Alignment:
Q  3 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgat 90  Q
    |||||||||| ||  | |||| ||||||| ||||| |  ||||||||| |||||| |||||||||||||||||||||  |||||||||    
T  47304172 taagataaatgattcaaggatcgatttgaaagtgagtggcataattcaaggaccaacttgatttttaatgaataattatgggatcgat 47304259  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 20268389 - 20268323
Alignment:
Q  4 aagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaa 70  Q
    |||||||||||| || |||| ||||| ||||||| | |||||||||||  |||| ||||||||||||    
T  20268389 aagataaataatttatggatcgatttaatagtgagtgacataattcattaaccaacttgatttttaa 20268323  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 30332420 - 30332378
Alignment:
Q  35 tgaataacataattcatggaccatcttgatttttaatgaataa 77  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  30332420 tgaatgacataattcaggaaccatcttgatttttaatgaataa 30332378  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 5987840 - 5987880
Alignment:
Q  39 taacataattcatggaccatcttgatttttaatgaataatt 79  Q
    |||||||||||| || ||||||||||||||||| |||||||    
T  5987840 taacataattcagggtccatcttgatttttaattaataatt 5987880  T

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Target: scaffold0426 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 3539 - 3461
Alignment:
Q  9 aaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatc 87  Q
    ||||||| ||||||| |||||| | |||||| |||||||| | | |||| ||| |||||||||||||||||||| ||||    
T  3539 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatc 3461  T

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