View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18444_low_5 (Length: 554)

Name: NF18444_low_5
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18444_low_5
NF18444_low_5
[»] chr2 (13 HSPs)
chr2 (19-422)||(18025742-18026150)
chr2 (267-422)||(29395501-29395656)
chr2 (277-422)||(6892780-6892925)
chr2 (289-419)||(3216584-3216714)
chr2 (267-422)||(25342158-25342309)
chr2 (19-159)||(17231235-17231369)
chr2 (267-362)||(25345456-25345551)
chr2 (350-422)||(3221528-3221600)
chr2 (159-237)||(25342319-25342402)
chr2 (363-422)||(33458045-33458103)
chr2 (363-420)||(34478619-34478675)
chr2 (160-246)||(29395657-29395748)
chr2 (388-422)||(25346641-25346675)
[»] chr3 (9 HSPs)
chr3 (160-422)||(37494512-37494769)
chr3 (262-419)||(9689037-9689194)
chr3 (282-422)||(26569730-26569870)
chr3 (281-422)||(11992930-11993071)
chr3 (21-138)||(19675762-19675873)
chr3 (363-422)||(39759754-39759812)
chr3 (363-422)||(43823145-43823203)
chr3 (199-246)||(26569676-26569723)
chr3 (364-422)||(53286069-53286126)
[»] scaffold0004 (1 HSPs)
scaffold0004 (160-422)||(35693-35950)
[»] scaffold0311 (2 HSPs)
scaffold0311 (159-422)||(1186-1448)
scaffold0311 (409-451)||(1511-1553)
[»] chr5 (8 HSPs)
chr5 (162-422)||(34091750-34092018)
chr5 (267-422)||(34113845-34114000)
chr5 (267-422)||(40941507-40941662)
chr5 (313-419)||(31204988-31205091)
chr5 (159-237)||(34113752-34113835)
chr5 (363-422)||(41992706-41992764)
chr5 (364-422)||(37369319-37369376)
chr5 (164-204)||(18528372-18528412)
[»] chr8 (6 HSPs)
chr8 (160-422)||(23003837-23004079)
chr8 (272-419)||(18952494-18952641)
chr8 (308-422)||(1089840-1089953)
chr8 (259-419)||(18964829-18964994)
chr8 (363-422)||(38567737-38567795)
chr8 (160-208)||(12524657-12524705)
[»] chr6 (6 HSPs)
chr6 (267-422)||(8366055-8366210)
chr6 (272-422)||(20771778-20771928)
chr6 (160-241)||(20771686-20771767)
chr6 (363-422)||(3288171-3288229)
chr6 (364-422)||(11843628-11843685)
chr6 (418-452)||(20771996-20772030)
[»] chr4 (15 HSPs)
chr4 (267-422)||(56290421-56290576)
chr4 (259-422)||(46203688-46203851)
chr4 (194-246)||(56290368-56290420)
chr4 (363-422)||(11945190-11945248)
chr4 (363-422)||(41055148-41055206)
chr4 (363-422)||(55682407-55682465)
chr4 (364-422)||(44420664-44420721)
chr4 (363-422)||(374621-374679)
chr4 (363-422)||(2469352-2469410)
chr4 (363-418)||(7199630-7199684)
chr4 (375-422)||(11945100-11945146)
chr4 (363-422)||(37517129-37517187)
chr4 (363-422)||(37521345-37521403)
chr4 (159-208)||(28624011-28624060)
chr4 (381-422)||(48236499-48236539)
[»] chr7 (11 HSPs)
chr7 (194-422)||(31379866-31380095)
chr7 (282-422)||(46841834-46841974)
chr7 (158-246)||(42772777-42772865)
chr7 (363-422)||(11591844-11591902)
chr7 (363-422)||(43614160-43614218)
chr7 (363-422)||(46066867-46066925)
chr7 (363-422)||(33516113-33516171)
chr7 (363-422)||(48827204-48827262)
chr7 (368-422)||(36828191-36828244)
chr7 (364-422)||(37068425-37068482)
chr7 (164-239)||(32788577-32788657)
[»] scaffold0534 (1 HSPs)
scaffold0534 (158-246)||(10861-10949)
[»] chr1 (9 HSPs)
chr1 (159-208)||(41013010-41013059)
chr1 (365-422)||(8114512-8114568)
chr1 (375-422)||(3967793-3967839)
chr1 (363-422)||(20993655-20993713)
chr1 (363-422)||(52004507-52004565)
chr1 (363-422)||(52539691-52539749)
chr1 (364-422)||(3170396-3170453)
chr1 (284-322)||(34570713-34570751)
chr1 (363-422)||(42871969-42872028)
[»] scaffold0368 (1 HSPs)
scaffold0368 (363-422)||(8560-8619)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 18026150 - 18025742
Alignment:
Q  19 caccaaaacttttacctctaaagtgatcattttcaggtatcacttcatgattatttactataactatgcttacattcagcttgtgatagttgatttctaa 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026150 caccaaaacttttacctctaaagtgataattttcaggtatcacttcatgattatttactataactatgcttacattcagcttgtgatagttgatttctaa 18026051  T
Q  119 agcttttagtgaattcttttccatgaatgactggtagtagcctctgttgtcaatagcggccgcgctgaccgctatagcggagcgga-----aaaatcagg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||     |||||||||    
T  18026050 agcttttagtgaattcttttccatgaatgactggtagtagcctctgttttcaatagcggccgtgctgactgctatagcggagcggagcggaaaaatcagg 18025951  T
Q  214 accgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcacgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataact 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025950 accgccgcaccaggccgcgtcggcgcgtctcaggcggtgtcagcacgtgtcaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataact 18025851  T
Q  314 tgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaagg 413  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025850 tgtactagttgtatataattggtattagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaagg 18025751  T
Q  414 tattttagt 422  Q
    |||||||||    
T  18025750 tattttagt 18025742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 29395656 - 29395501
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29395656 aagtggaaagcggccaaaatggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttt 29395557  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29395556 tatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagt 29395501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 277 - 422
Target Start/End: Original strand, 6892780 - 6892925
Alignment:
Q  277 cggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatat 376  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||| ||||||| ||||||||||||||||||    
T  6892780 cggccaaagcggacctataaatagtaaaacaaaaacttgtactagttgtatataactagtattagccattttcaattttgctatcccttttatttcatat 6892879  T
Q  377 tataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
     || |||||||||||||||||||||||||| |||||||||||||||    
T  6892880 gatgaatacttcatgaaattttgagtaatgtttaaggtattttagt 6892925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 3216584 - 3216714
Alignment:
Q  289 acctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttc 388  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  ||| ||| ||| |||||||||| ||||||||||||||||||||| ||||||||    
T  3216584 acctataaatagtaaaacgataacttgtactagttgtatataattcttattagcgattatcgattttgctatcccttttatttcatattatgaatacttc 3216683  T
Q  389 atgaaattttgagtaatgcttaaggtatttt 419  Q
    |||||| ||||||||||| ||||||||||||    
T  3216684 atgaaactttgagtaatgtttaaggtatttt 3216714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 25342309 - 25342158
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  25342309 aagtggaaagcggccaaagcggac-tataaatactataacaataacttgtactagttgtatataattggtattattcattttcgattttgctatcccttt 25342211  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| ||||   ||||||||||||||||||| |||||||||||||||    
T  25342210 tatttcatattatgaata---catgaaattttgagtaatgtttaaggtattttagt 25342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 17231235 - 17231369
Alignment:
Q  19 caccaaaacttttacctctaaagtgatcattttcaggtatcacttcatgattatttactataactatgcttacattcagcttgtgatagttgatttctaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||      ||||||||||||||||||||| |||||||||||    
T  17231235 caccaaaacttttacttctaaagtgatcattttcaggtatcacttcatgattacttattat------gcttacattcagcttgtgatatttgatttctaa 17231328  T
Q  119 agcttttagtgaattcttttccatgaatgactggtagtagc 159  Q
    |||| |||||||||||||||  ||||||||||| |||||||    
T  17231329 agctgttagtgaattcttttggatgaatgactgatagtagc 17231369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 25345456 - 25345551
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcc 362  Q
    |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  25345456 aagtggaaagcggccaaagcggacctataaatagtataacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcc 25345551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 3221600 - 3221528
Alignment:
Q  350 gattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  3221600 gattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaaggtattttagt 3221528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 25342402 - 25342319
Alignment:
Q  159 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcg-----gaaaaatcaggaccgccgcaccaggccacgtcggc 237  Q
    ||||||||||||| |||||||||||   |||||| |||||||||     |||||||||||||| |||||||||||| |||||||    
T  25342402 cctctgttgtcaaaagcggccgcgccagccgctacagcggagcgtagtggaaaaatcaggaccaccgcaccaggccgcgtcggc 25342319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 33458103 - 33458045
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  33458103 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 33458045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 34478675 - 34478619
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtatttta 420  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  34478675 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtatttta 34478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 29395748 - 29395657
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctata-----gcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 246  Q
    ||||||| |||||||||||||||| | |||||| |     |||||||||||||||||  ||| |||||||||||| |||||||| || ||||    
T  29395748 ctctgttatcaatagcggccgcgccggccgctacaccagagcggagcggaaaaatcaataccaccgcaccaggccgcgtcggcgtgtgtcag 29395657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 25346675 - 25346641
Alignment:
Q  388 catgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||||||||| |||||||||||||||    
T  25346675 catgaaattttgagtaatgtttaaggtattttagt 25346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 160 - 422
Target Start/End: Complemental strand, 37494769 - 37494512
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 259  Q
    ||||||||||||||||||||||||  || |||||||     |||||||||||||||| ||||||||||||| ||||||||||||||||| | | |||| |    
T  37494769 ctctgttgtcaatagcggccgcgccaactgctatag-----cggaaaaatcaggaccaccgcaccaggccatgtcggcgcgtctcaggccgcgacagcgc 37494675  T
Q  260 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 359  Q
    ||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |    
T  37494674 gtgtcaaaagttgaaagcggccaaagcggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgcta 37494575  T
Q  360 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  37494574 tcccttttatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagt 37494512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 9689194 - 9689037
Alignment:
Q  262 gccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatc 361  Q
    ||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||     
T  9689194 gccaaaagtggaaagcggccaaagcggacctataaatagtaaatcaataacttgtactagttgtatataattggtattagccatttttgattttgctatt 9689095  T
Q  362 ccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtatttt 419  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  9689094 ccttttatttcatattatgaatacttcatgaaattttgagtaatgattaaggtatttt 9689037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 282 - 422
Target Start/End: Original strand, 26569730 - 26569870
Alignment:
Q  282 aaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataa 381  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||| |    
T  26569730 aaagcggacctataaatagtaaaacaataacttgtactggttgtatataattggtattggctattttcgattttgctatcccttttatttcatattatga 26569829  T
Q  382 atacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  26569830 atacttcatgaaattttgagtaatgtttaaggtattttagt 26569870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 11993071 - 11992930
Alignment:
Q  281 caaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattata 380  Q
    ||||||| ||||||  |||||||||| ||||||||||||| |||||||| |||| ||| ||| |||||||||||||| ||||| |||||||||||||||     
T  11993071 caaagcggacctatcgatagtaaaacgataacttgtactaattgtatatgattgttattagcgattttcgattttgctatcccatttatttcatattatg 11992972  T
Q  381 aatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  11992971 aatacttcaagaaattttgagtaatgtttaaggtattttagt 11992930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 19675873 - 19675762
Alignment:
Q  21 ccaaaacttttacctctaaagtgatcattttcaggtatcacttcatgattatttactataactatgcttacattcagcttgtgatagttgatttctaaag 120  Q
    ||||||||||||| |||||||||||||||||||||| ||| || || ||||||||      |||||||||||| ||||||||||  ||||||||||  ||    
T  19675873 ccaaaacttttacttctaaagtgatcattttcaggtttcattttataattattta------ctatgcttacatgcagcttgtgacggttgatttcttgag 19675780  T
Q  121 cttttagtgaattctttt 138  Q
     | |||||||| ||||||    
T  19675779 ttgttagtgaaatctttt 19675762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 39759754 - 39759812
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  39759754 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 39759812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 43823203 - 43823145
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  43823203 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 43823145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 26569676 - 26569723
Alignment:
Q  199 agcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 246  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||||    
T  26569676 agcggaaaaatcaggaccaccgcaccaggccgcgtcggtgcgtgtcag 26569723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 53286126 - 53286069
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||  ||||||| ||||| |||||||||||| |||||||||||||||    
T  53286126 ttttatttcaaattaagaatacttaatgaa-ttttgagtaatgtttaaggtattttagt 53286069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 160 - 422
Target Start/End: Complemental strand, 35950 - 35693
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 259  Q
    ||||||||||||||| |||||||| |||||||||||||||     |||||||||||| ||| ||||| || ||||||||||| |||||| | ||| ||      
T  35950 ctctgttgtcaatagtggccgcgccgaccgctatagcgga-----aaaatcaggaccaccgtaccagaccgcgtcggcgcgtgtcaggccgcgtcggcct 35856  T
Q  260 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 359  Q
    ||| ||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |    
T  35855 gtgtcaaaagtggaaagtggccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagcgattttcgattttgcta 35756  T
Q  360 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  35755 tcccttttatttcatattatgaatacttcatgaaattttgagtaatgtttaaggtattttagt 35693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 159 - 422
Target Start/End: Original strand, 1186 - 1448
Alignment:
Q  159 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagca 258  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||   ||| ||     
T  1186 cctcagttgtcaatagcggccgcgccggccgctatagcggagcggaaaaatcaagaccaccgcaccaggccgcgtcggcgcgtgtcaggccacgtcggct 1285  T
Q  259 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgca 358  Q
    |||| || |||| |||| |||||||   | ||||||||||||||||  |||||||||||||  ||||||||||||||||| ||||||||||||||||||     
T  1286 cgtgtcagaagtggaaagcggccaagatggacctataaatagtaaattaataacttgtactcattgtatataattggtattagccattttcgattttgct 1385  T
Q  359 atcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  1386 atcccttttatttcatattatgaatacttcatgaaattttgagtaat-attaaggtattttagt 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 1511 - 1553
Alignment:
Q  409 taaggtattttagtggccgcaccaccgaaatagcacccgctac 451  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  1511 taaggtattttagtggctgcaccaccgaaatagcgcccgctac 1553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 162 - 422
Target Start/End: Complemental strand, 34092018 - 34091750
Alignment:
Q  162 ctgttgtcaatagcggccgcgctgaccgctatagcggagc-----ggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcag 256  Q
    ||||||||||||||||||| ||   |||||||||||||||     ||||||||||||||  |||||||||||| |||||||| || |||||| | ||| |    
T  34092018 ctgttgtcaatagcggccgtgcctgccgctatagcggagcagagcggaaaaatcaggacaaccgcaccaggccgcgtcggcgtgtgtcaggctgcgtcgg 34091919  T
Q  257 cacgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtata---taattggtatcagccattttcgatt 353  Q
    | |||| || |||  |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  34091918 cgcgtgtcagaagcggaaagcagccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataataattggtattagccattttcgatt 34091819  T
Q  354 ttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||||||    
T  34091818 ttgctatcccttttatttcatattatgaatacttcatgaacatttaagtaatgtttaaggtattttagt 34091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 267 - 422
Target Start/End: Original strand, 34113845 - 34114000
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  34113845 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttt 34113944  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  34113945 tatttcatattatgaatacatcatgaaattttgagtaatgtttaaggtattttagt 34114000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 40941662 - 40941507
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||    
T  40941662 aagtggaaagcggtcaaagcggacccatcaatagtaaaacaataacttgtactagttgtatataattggtattagcgatttttgattttgctatcccttt 40941563  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  40941562 tatttcatattatgaatacttaatgaaattttgagtaatgtttaaggtattttagt 40941507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 31205091 - 31204988
Alignment:
Q  313 ttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaag 412  Q
    ||||||||||||||||||||||||||  || |||||| ||||||| |||| ||||||||||   ||| |||||||||||||||||||||||||  |||||    
T  31205091 ttgtactagttgtatataattggtattggctattttcaattttgctatcctttttatttca---tatgaatacttcatgaaattttgagtaatatttaag 31204995  T
Q  413 gtatttt 419  Q
    |||||||    
T  31204994 gtatttt 31204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 34113752 - 34113835
Alignment:
Q  159 cctctgttgtcaatagcggccgcgctgaccgctat-----agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggc 237  Q
    ||||||||||||| |||||||||||   |||||||     |||| |||||||||||||||||| |||||||||||| |||||||    
T  34113752 cctctgttgtcaaaagcggccgcgccagccgctatagcagagcgtagcggaaaaatcaggaccaccgcaccaggccgcgtcggc 34113835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 41992706 - 41992764
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| ||||||||    
T  41992706 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggaattttagt 41992764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 37369376 - 37369319
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||  ||||||||||||| |||| ||||||| |||||||||||||||    
T  37369376 ttttatttcaaattaggaatacttcatgaa-ttttaagtaatgtttaaggtattttagt 37369319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 18528372 - 18528412
Alignment:
Q  164 gttgtcaatagcggccgcgctgaccgctatagcggagcgga 204  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  18528372 gttgtcaaaagcggccgcgctggccgctatagcggtgcgga 18528412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 160 - 422
Target Start/End: Original strand, 23003837 - 23004079
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcac 259  Q
    |||||||||||| |||| |||||| | ||||||||||| |||||||||||||||||| |||||||||||| |||||||| || ||||                 
T  23003837 ctctgttgtcaaaagcgtccgcgccggccgctatagcgtagcggaaaaatcaggaccaccgcaccaggccgcgtcggcgtgtgtcag------------- 23003923  T
Q  260 gtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaa 359  Q
           |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  23003924 -------aagtggaaagcggccaaagcggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgcta 23004016  T
Q  360 tcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||    
T  23004017 tcccttttatttcatattacgaatacttcatgaaattttgactaatgtttaaggtattttagt 23004079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 419
Target Start/End: Original strand, 18952494 - 18952641
Alignment:
Q  272 gaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttattt 371  Q
    |||| ||| ||||||| |||||| |||||||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |||  ||||||||    
T  18952494 gaaagcggtcaaagcggacctatcaatagtaaaagaataacttgtactagttgtgtataactggtattagcaattttcgattttgctatcttttttattt 18952593  T
Q  372 catattataaatacttcatgaaattttgagtaatgcttaaggtatttt 419  Q
    |||||||| |||  || ||||||||| |||||||| || |||||||||    
T  18952594 catattatgaatgttttatgaaatttggagtaatgttttaggtatttt 18952641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 422
Target Start/End: Original strand, 1089840 - 1089953
Alignment:
Q  308 ataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaatgc 407  Q
    |||||||||||||||||||||||||||||||  || |||||   |||||| |||| || |||||||| |||| ||||||||| |||||||||||||| |     
T  1089840 ataacttgtactagttgtatataattggtatttgcgattttttcttttgctatcc-ttctatttcatgttatgaatacttcaagaaattttgagtaaagt 1089938  T
Q  408 ttaaggtattttagt 422  Q
    |||||||||||||||    
T  1089939 ttaaggtattttagt 1089953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 259 - 419
Target Start/End: Complemental strand, 18964994 - 18964829
Alignment:
Q  259 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttg----tatataattggtatcagccattttcgattt 354  Q
    ||||||| |||  |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||    | ||||| |||||| ||| |||||| ||||    
T  18964994 cgtgccagaaggggaaagcggtcaaagcggacctattaatagtaaaacaataacttgtactagttgtgtatttataactggtattagcgattttctattt 18964895  T
Q  355 tgc-aatcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtatttt 419  Q
    ||| ||    |||||||||||||||| | || || ||||||||| |||||||| | ||||||||||    
T  18964894 tgctaactttttttatttcatattatgattattttatgaaatttggagtaatgttgaaggtatttt 18964829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 38567737 - 38567795
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  38567737 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 38567795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 12524657 - 12524705
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 208  Q
    |||||||||||||||| |||||||   ||||||||||||||||||||||    
T  12524657 ctctgttgtcaatagctgccgcgccacccgctatagcggagcggaaaaa 12524705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 8366210 - 8366055
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8366210 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttt 8366111  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| ||||| |||||||| ||| ||||||| |||||||||||||||    
T  8366110 tatttcatattatgaatacatcatgaaaatttaagtaatgtttaaggtattttagt 8366055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 272 - 422
Target Start/End: Original strand, 20771778 - 20771928
Alignment:
Q  272 gaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttattt 371  Q
    |||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  20771778 gaaagcggccaaaatggacctataaatagtaaaacaataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttattt 20771877  T
Q  372 catattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||| || |||||||||||||||||||||   |||||||||||||||    
T  20771878 catattatgaaaacttcatgaaattttgagtaacatttaaggtattttagt 20771928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 20771686 - 20771767
Alignment:
Q  160 ctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgt 241  Q
    ||||||||| |||||||||||| | | || |||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  20771686 ctctgttgttaatagcggccgcaccggccactatagcggagcgggaaaatcaagaccaccgcaccaggccacgtcggcgcgt 20771767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 3288229 - 3288171
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||| |||||    
T  3288229 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtatcttagt 3288171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 11843628 - 11843685
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||  ||||||| ||||| |||||||||||| |||||||||||||||    
T  11843628 ttttatttcaaattaagaatacttaatgaa-ttttgagtaatgtttaaggtattttagt 11843685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 20771996 - 20772030
Alignment:
Q  418 ttagtggccgcaccaccgaaatagcacccgctacg 452  Q
    ||||||||||||||||||||||||||| |||||||    
T  20771996 ttagtggccgcaccaccgaaatagcacacgctacg 20772030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 267 - 422
Target Start/End: Original strand, 56290421 - 56290576
Alignment:
Q  267 aagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttt 366  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  56290421 aagtggaaagcggccaaagtggacctataaatagtaaaacaataacttgtactagttgtatataattggtattagccattttcgatttttctatcccttt 56290520  T
Q  367 tatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||||||||||| ||| ||||| ||||||| ||| |||||||||||||||    
T  56290521 tatttcatattataaatatttcttgaaactttgagtcatgtttaaggtattttagt 56290576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 259 - 422
Target Start/End: Original strand, 46203688 - 46203851
Alignment:
Q  259 cgtgccaaaagttgaaaacggccaaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgca 358  Q
    |||| ||||||| ||||  |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||     
T  46203688 cgtgtcaaaagtggaaagaggccaaagcagacctataaatagtaaaacaataacttgtacaagttgtatataattggtattagccattttcgattttgct 46203787  T
Q  359 atcccttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||| |||||||||    
T  46203788 atcccttttatttcatatgatgaatacttcatgtaattttgagtaacgtttaagttattttagt 46203851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 56290368 - 56290420
Alignment:
Q  194 agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 246  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  56290368 agcggagcggaaaaatcaggaccaccgcaccaggccgcgtcggcgcgtgtcag 56290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 11945248 - 11945190
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||  ||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  11945248 cttttatttcgaattatgaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 11945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 41055206 - 41055148
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  41055206 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 41055148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 55682407 - 55682465
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  55682407 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 55682465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 44420721 - 44420664
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||| |||||||||| ||||||||||||||  |||||||||||||||    
T  44420721 ttttatttcaaattatgaatacttcat-aaattttgagtaatatttaaggtattttagt 44420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 374679 - 374621
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| ||||||||    
T  374679 cttttatttcaaattaagaatacttcatgaa-ttttgagtaatgtttaaggaattttagt 374621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 2469352 - 2469410
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||| |||||||||    
T  2469352 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaagatattttagt 2469410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 7199630 - 7199684
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattt 418  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||    
T  7199630 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattt 7199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 11945146 - 11945100
Alignment:
Q  375 attataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  11945146 attatgaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 11945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 37517187 - 37517129
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||| | ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  37517187 cttttattttaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 37517129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 37521403 - 37521345
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||| | ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  37521403 cttttattttaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 37521345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 28624060 - 28624011
Alignment:
Q  159 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 208  Q
    ||||||||||||||||| |||||||   ||||||||||| ||||||||||    
T  28624060 cctctgttgtcaatagcagccgcgccacccgctatagcgaagcggaaaaa 28624011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 48236499 - 48236539
Alignment:
Q  381 aatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  48236499 aatacttcatgaa-ttttgagtaatgtttaaggtattttagt 48236539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 422
Target Start/End: Original strand, 31379866 - 31380095
Alignment:
Q  194 agcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcaggcggtgtcagcacgtgccaaaagttgaaaacggccaaagcgaaccta 293  Q
    |||| ||||||||||| |||||| || ||||||||| |||||| | || || ||| | ||  || | || || |||| |||| |||||||||||   |||    
T  31379866 agcgtagcggaaaaat-aggaccaccacaccaggccgcgtcggtgtgtgtctggccgcgttggcgcatgtcagaagtggaaagcggccaaagcgggacta 31379964  T
Q  294 taaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttc--atattataaatacttcatg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||  ||||||| |||||||||||    
T  31379965 taaatagtaaaacaataacttgtactagttgtatataattggtattagccatttttgattttgctatcccttttatttcatatattatgaatacttcatg 31380064  T
Q  392 aaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||||| | || ||||||||||    
T  31380065 aaattttgagtaatgttaaatgtattttagt 31380095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 282 - 422
Target Start/End: Original strand, 46841834 - 46841974
Alignment:
Q  282 aaagcgaacctataaatagtaaaacaataacttgtactagttgtatataattggtatcagccattttcgattttgcaatcccttttatttcatattataa 381  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||| |||| ||||||||| |||||| |||||||||||||  |    
T  46841834 aaagcggacctatcaatagtaaaacaataacttgtactagttgtatatagttgatattagctatttccgattttgctatccctattatttcatattacga 46841933  T
Q  382 atacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  46841934 atacttcatgaaattttgagtaatgtttaaggtattttagt 46841974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 42772865 - 42772777
Alignment:
Q  158 gcctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 246  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||  ||||| |||| || |||||||||| ||||    
T  42772865 gcctctgttgtcaaaagcggccacgctggccgctatagcggagcggaaaaattaggacaaccgcaacaggtcatgtcggcgcgtgtcag 42772777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 11591844 - 11591902
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  11591844 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 11591902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 43614160 - 43614218
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  43614160 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 43614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 46066925 - 46066867
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||||    
T  46066925 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 46066867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 33516171 - 33516113
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||| ||| |||||||||||||||    
T  33516171 cttttatttcaaattaggaatacttcatgaa-ttttgagtgatgtttaaggtattttagt 33516113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 48827204 - 48827262
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||| ||||| |||||||||||| |||||||||||||||    
T  48827204 cttttatttcaaattaggaatacttaatgaa-ttttgagtaatgtttaaggtattttagt 48827262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 36828244 - 36828191
Alignment:
Q  368 atttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||| ||||| |||||||||| ||||||||||||||  |||||||||||||||    
T  36828244 atttcaaattatgaatacttcat-aaattttgagtaatatttaaggtattttagt 36828191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 37068425 - 37068482
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||| ||||||||||| | |||||| ||||| |||||||||||||||    
T  37068425 ttttatttcaaattatgaatacttcatg-atttttgattaatgtttaaggtattttagt 37068482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 32788657 - 32788577
Alignment:
Q  164 gttgtcaatagcggccgcgctgaccgctata-----gcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgc 239  Q
    |||||||| ||||||||| | | ||||||||     ||||||||||||||||| |||| ||||||| |||| |||||||||    
T  32788657 gttgtcaaaagcggccgcaccggccgctatagcggtgcggagcggaaaaatcacgaccaccgcacctggccgcgtcggcgc 32788577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 10861 - 10949
Alignment:
Q  158 gcctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaatcaggaccgccgcaccaggccacgtcggcgcgtctcag 246  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||  || || ||||||| |||||||||| ||||    
T  10861 gcctctgttgtcaaaagcggccacgctggccgctatagcggagcggaaaaattaggacaaccacaacaggccatgtcggcgcgtgtcag 10949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 41013059 - 41013010
Alignment:
Q  159 cctctgttgtcaatagcggccgcgctgaccgctatagcggagcggaaaaa 208  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  41013059 cctctgttgtcaatagcggccgcgccgcccgctatagcagagcggaaaaa 41013010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 8114512 - 8114568
Alignment:
Q  365 tttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||| | ||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  8114512 tttattttaaattatgaatacttcat-aaattttgagtaatgtttaaggtattttagt 8114568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 3967793 - 3967839
Alignment:
Q  375 attataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  3967793 attatgaatacttcatgaa-ttttaagtaatgcttaaggtattttagt 3967839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 20993713 - 20993655
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| || |  ||||||||||||| |||||||||||| |||||||||||||||    
T  20993713 cttttatttcaaataaggaatacttcatgaa-ttttgagtaatgtttaaggtattttagt 20993655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 52004565 - 52004507
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| | |||||||||| |||||||||||||||    
T  52004565 cttttatttcaaattaggaatacttcatgaa-tcttgagtaatgtttaaggtattttagt 52004507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 52539691 - 52539749
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| |||||| ||||||||    
T  52539691 cttttatttcaaattaggaatacttcatgaa-ttttgagtaatgtttaaggaattttagt 52539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 3170453 - 3170396
Alignment:
Q  364 ttttatttcatattataaatacttcatgaaattttgagtaatgcttaaggtattttagt 422  Q
    |||||||||| ||||| |||||||||| ||||||||||||||  ||||| |||||||||    
T  3170453 ttttatttcaaattatgaatacttcat-aaattttgagtaatatttaagatattttagt 3170396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 34570713 - 34570751
Alignment:
Q  284 agcgaacctataaatagtaaaacaataacttgtactagt 322  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  34570713 agcggacctatgaatagtaaaacaataacttgtactagt 34570751  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 42872028 - 42871969
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgctt-aaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||| || |||||||||||||    
T  42872028 cttttatttcaaattaggaatacttcatg-aattttgagtaatgtttaaaggtattttagt 42871969  T

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Target: scaffold0368 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 8560 - 8619
Alignment:
Q  363 cttttatttcatattataaatacttcatgaaattttgagtaatgctt-aaggtattttagt 422  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||| || |||||||||||||    
T  8560 cttttatttcaaattaggaatacttcatg-aattttgagtaatgtttaaaggtattttagt 8619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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