View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18444_low_7 (Length: 491)
Name: NF18444_low_7
Description: NF18444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18444_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 50 - 311
Target Start/End: Original strand, 37956646 - 37956907
Alignment:
| Q |
50 |
ccgaaataagcacacaacataaagcttaaatgaaatacctgatccaccacccaaagttgttcaagatcactagaaggcatttcaagtgcaacaagatttt |
149 |
Q |
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| T |
37956646 |
ccgaaataagcacacaacataaagcttaaatgaaatacctgatccaccagccaaagtcgttcaagatcactagaaggcatttcaagtgcaacaagatttt |
37956745 |
T |
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| Q |
150 |
ctgggaaagcttgcggcaaatatctttgagggaagttctcctagcaaagaaattttaaagcatccggaagactctcaagaaatgcatgaaaggtcccatt |
249 |
Q |
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| T |
37956746 |
ctgggaaagcttgcggcaaatatctttgagggaagttctcccaacaaagaaattttaaagcatccggaagactctcaagaaatgcatgaaaggtcccatt |
37956845 |
T |
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| Q |
250 |
tgagctccaagagagatcatagaattggagcattctaagattacgcattttcttaaaagttt |
311 |
Q |
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| T |
37956846 |
tgagctccaagagagatcatagaattggagcattctaagattacgcattttcttaaaagttt |
37956907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 37956902 - 37957009
Alignment:
| Q |
344 |
aagtttaggaatatacaccggattgcatctgttccctacaagcaagcaaacattgggaactattagagataaaacaagaaaaaagtggttccattacggt |
443 |
Q |
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| T |
37956902 |
aagtttaggaatatacaccggattgcatctgttccctacaagcaagcaaacattgggaattattacagataaaacaagaaaaaagttgttccattacggt |
37957001 |
T |
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| Q |
444 |
aagtaatt |
451 |
Q |
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|||||||| |
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| T |
37957002 |
aagtaatt |
37957009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 37931051 - 37930871
Alignment:
| Q |
57 |
aagcacacaacataaagctt-aaatgaaatacctgatccaccacccaaagttgttcaagatcactagaaggcatttcaagtgcaacaagattttctggg- |
154 |
Q |
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| T |
37931051 |
aagcacacaacataaaacttgaaatgaattacctgatctccctcccaaagttgttcaagacggctatgaggcatatcaagtttaacaagattttctgggc |
37930952 |
T |
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| Q |
155 |
aaagct--tgcggcaaatatctttgagggaagttctcctagcaaagaaattttaaagcatccggaagactctcaagaaatg |
233 |
Q |
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||| || | |||||| |||||||||| ||| | ||| | | ||||||||||||| ||||||| ||| ||| |||||||| |
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| T |
37930951 |
aaaactccaggggcaaagatctttgaggaaagctatcccaacgaagaaattttaaatcatccgggagaatcttaagaaatg |
37930871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 37930824 - 37930706
Alignment:
| Q |
268 |
atagaattggagcattctaagattacgcattttcttaaaagtttcagcatgtagttgaactttcattatataacataagtttaggaatatacaccggatt |
367 |
Q |
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|||||| |||| |||||||||||| |||| ||||| ||||||||| ||||||||| || |||| |||| | || || |||||||| ||| ||||| |
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| T |
37930824 |
atagaactggatgattctaagattatgcatcttcttgaaagtttcaacatgtagttcaattttctttattttgcacgtgtccaggaatatgcactggatt |
37930725 |
T |
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| Q |
368 |
gcatctgttccctacaagc |
386 |
Q |
| |
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|||||||||||||| |||| |
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| T |
37930724 |
gcatctgttccctaaaagc |
37930706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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