View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18445_high_1 (Length: 513)
Name: NF18445_high_1
Description: NF18445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18445_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 228 - 494
Target Start/End: Complemental strand, 15506861 - 15506595
Alignment:
| Q |
228 |
tgttatatcagtgtgtgagagggttgtactatgaagtgagcactcttatctttattgtcagagagagcaactaaatagttgtcacaagttcaagaaagta |
327 |
Q |
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| T |
15506861 |
tgttatatcagtgtgtgagagggttgtactatgaagtgagcactcttatctttattgtcagagagagcaactaaatagttgtcacaagttcaagaaagta |
15506762 |
T |
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| Q |
328 |
tgagatcaatgtgaggtaagagtaagctcatgagagagtttatttacccttcctagtcctaaagacaaatatttcagcttagaattatgtttctttcaag |
427 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15506761 |
tgagatcaatatgaggtaagagtaagctcatgagagagtttatttaccctttcaagtcctatggacaaatatttcagcttagaattatgtttctttcaag |
15506662 |
T |
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| Q |
428 |
agtaaacagccatttgagtatttgaatatgtaggtcaccatcatccaaaattacaaaaacatcttac |
494 |
Q |
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| T |
15506661 |
agtaaacagccatttgagtatttgaatatgtcggtcactatcatccaaaattacaaaaacatcttac |
15506595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15507090 - 15506887
Alignment:
| Q |
1 |
gtggaaataagaacaaaacaagacatgcctgaaagaggcaagaaatgaactttgtttgctggatttccatcatgtctttcatatgatctttggtcaactc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15507090 |
gtggaaataagaacaaaacaagacatgcttgaaagaggaatgaaatgaactttgtttgctggattcccatcatgtctttcatatgatctttggtcaactc |
15506991 |
T |
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| Q |
101 |
aatctccaattaatactagtggagatttaaggctgcaatactagagcatttcaagtattgaatgtgcctcccataaagtactcttcaaggggcttatcat |
200 |
Q |
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| T |
15506990 |
aatctccaattaatactggtggagatttaaggctgcaacactagagcatttcaagtattgaatgtgcctcccataaagtactcttcaaggggcttatcat |
15506891 |
T |
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| Q |
201 |
tttg |
204 |
Q |
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| T |
15506890 |
tttg |
15506887 |
T |
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