View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18445_high_4 (Length: 305)

Name: NF18445_high_4
Description: NF18445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18445_high_4
NF18445_high_4
[»] chr2 (1 HSPs)
chr2 (18-305)||(36741918-36742205)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 36742205 - 36741918
Alignment:
Q  18 atcaaataccaaaatggaatcaatcacatgatgatgagtattgatgcaaactcgttctcgttaaaacatgtccctggcaaacttctgttaacttattgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36742205 atcaaataccaaaatggaatcaatcacatgatgatgagtattgatgcaaactcgttctcgttaaaacttgtccctggcaaacttctgttaacttattgat 36742106  T
Q  118 aattctgaacattagaaattcaaactgcata-ttataaatctgcatattcgaacattgttgaatatgtgagattgacagcatgccgccttatgctaaaaa 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36742105 aattctgaacattagaaattcaaactgcatatttataaatctgcatattcgaacattgttgaatatgtgagattgacagcatgccaccttatgctaaaaa 36742006  T
Q  217 ttgcttctcagggaataaccattcacagttcacattgtactttgatatgaaatgttattacttcttgggttaaatatgtttttggtccc 305  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||| |||||| ||||    
T  36742005 ttgcttctcaggacataaccattcacagttcacattgtactctgatatgatatgttatta-tttttgggttaaatatatttttgatccc 36741918  T

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