View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18445_low_7 (Length: 275)
Name: NF18445_low_7
Description: NF18445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18445_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 38533469 - 38533215
Alignment:
| Q |
5 |
aacgagcagaacctgtgccattaaacggtgctatctgaaaatgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcata |
104 |
Q |
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| T |
38533469 |
aacgaggagaatcagtgccattaaacggtgctatctgaaaatgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcata |
38533370 |
T |
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| Q |
105 |
aagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgcc |
204 |
Q |
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| T |
38533369 |
aagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgcc |
38533270 |
T |
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| Q |
205 |
attctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagat |
259 |
Q |
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| T |
38533269 |
attctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagat |
38533215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 34715034 - 34715239
Alignment:
| Q |
46 |
tgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacat |
145 |
Q |
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| T |
34715034 |
tgccaaagcctaccaacacctttcaccaaattcttcctacaaagaaattcttcggcataaactttctcaaccttccgatccacatcatgcaaaaacacgt |
34715133 |
T |
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| Q |
146 |
gcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcgaaataccctttcggcgcatc |
245 |
Q |
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| T |
34715134 |
gcgtcacaccggaaccttttctatttctcgccatcaccgtcattgaaaatatcgccgccattctccccggcgcctccgcgaaataacctctcggcgcatc |
34715233 |
T |
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| Q |
246 |
gatcat |
251 |
Q |
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|||||| |
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| T |
34715234 |
gatcat |
34715239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 10189323 - 10189258
Alignment:
| Q |
90 |
aaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacacc |
155 |
Q |
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|||||| | ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |
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| T |
10189323 |
aaactccttagcataaagtttctcaacctccctatccacatcatgaagaaacacatgcgtcacacc |
10189258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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