View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18445_low_8 (Length: 267)

Name: NF18445_low_8
Description: NF18445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18445_low_8
NF18445_low_8
[»] chr5 (31 HSPs)
chr5 (18-256)||(14890779-14891017)
chr5 (18-256)||(28590730-28590967)
chr5 (24-256)||(544921-545153)
chr5 (16-256)||(25590696-25590936)
chr5 (18-256)||(40611528-40611766)
chr5 (18-256)||(32640556-32640794)
chr5 (18-256)||(8075452-8075689)
chr5 (18-256)||(4593723-4593964)
chr5 (18-206)||(2466440-2466628)
chr5 (18-124)||(4593122-4593229)
chr5 (18-124)||(40612407-40612514)
chr5 (18-122)||(545794-545899)
chr5 (18-124)||(2464937-2465044)
chr5 (18-124)||(8074718-8074825)
chr5 (16-124)||(9537300-9537410)
chr5 (20-124)||(32641491-32641596)
chr5 (39-124)||(28589991-28590077)
chr5 (198-256)||(2465696-2465754)
chr5 (73-122)||(19186055-19186104)
chr5 (18-89)||(9537838-9537910)
chr5 (18-124)||(14890037-14890144)
chr5 (69-124)||(31946804-31946859)
chr5 (71-124)||(19185981-19186034)
chr5 (18-116)||(27720727-27720827)
chr5 (71-114)||(23773301-23773344)
chr5 (67-118)||(31946882-31946933)
chr5 (69-118)||(13650990-13651039)
chr5 (69-124)||(19183256-19183310)
chr5 (18-64)||(18004922-18004968)
chr5 (71-117)||(23773186-23773232)
chr5 (18-89)||(21069553-21069625)
[»] chr7 (35 HSPs)
chr7 (18-256)||(42477648-42477886)
chr7 (18-256)||(35727966-35728204)
chr7 (18-256)||(7258543-7258780)
chr7 (22-259)||(48788290-48788526)
chr7 (18-256)||(48646316-48646555)
chr7 (18-256)||(44333405-44333643)
chr7 (20-256)||(45583856-45584093)
chr7 (121-256)||(10895277-10895412)
chr7 (18-117)||(10898829-10898928)
chr7 (18-123)||(39708389-39708495)
chr7 (18-126)||(30924763-30924872)
chr7 (18-124)||(7259441-7259548)
chr7 (16-124)||(12223436-12223544)
chr7 (20-124)||(32794543-32794648)
chr7 (18-119)||(45584250-45584352)
chr7 (18-118)||(33607271-33607372)
chr7 (18-124)||(48647191-48647298)
chr7 (18-113)||(12221569-12221666)
chr7 (18-124)||(35728843-35728949)
chr7 (18-124)||(10894610-10894718)
chr7 (18-124)||(44529556-44529663)
chr7 (71-126)||(8870342-8870397)
chr7 (18-107)||(34710156-34710246)
chr7 (20-124)||(32793438-32793543)
chr7 (18-118)||(44334213-44334313)
chr7 (18-59)||(6680335-6680376)
chr7 (71-124)||(8879249-8879302)
chr7 (71-124)||(24287789-24287842)
chr7 (82-122)||(39708486-39708526)
chr7 (81-124)||(8870785-8870828)
chr7 (77-124)||(48787611-48787658)
chr7 (20-124)||(19433666-19433768)
chr7 (81-118)||(330077-330114)
chr7 (71-124)||(25621462-25621515)
chr7 (18-51)||(34707880-34707913)
[»] chr1 (20 HSPs)
chr1 (18-254)||(9340659-9340895)
chr1 (18-256)||(7945191-7945429)
chr1 (18-256)||(52440177-52440415)
chr1 (29-189)||(32664781-32664941)
chr1 (18-124)||(32665525-32665632)
chr1 (22-120)||(51450292-51450391)
chr1 (18-118)||(34088213-34088312)
chr1 (18-123)||(52439729-52439835)
chr1 (18-122)||(6612698-6612803)
chr1 (18-118)||(6613736-6613837)
chr1 (18-112)||(25038146-25038240)
chr1 (18-112)||(25043358-25043452)
chr1 (18-115)||(34085795-34085893)
chr1 (73-116)||(534308-534351)
chr1 (21-124)||(7944422-7944534)
chr1 (18-69)||(23703955-23704006)
chr1 (71-126)||(44720592-44720647)
chr1 (77-123)||(8975508-8975554)
chr1 (20-58)||(22856953-22856991)
chr1 (77-126)||(29766249-29766298)
[»] chr8 (26 HSPs)
chr8 (18-256)||(35178422-35178660)
chr8 (18-256)||(10406459-10406697)
chr8 (18-124)||(32898193-32898300)
chr8 (22-122)||(5965172-5965273)
chr8 (18-124)||(5737130-5737236)
chr8 (18-124)||(10407332-10407439)
chr8 (18-120)||(35177662-35177764)
chr8 (18-109)||(32563841-32563933)
chr8 (18-126)||(28619279-28619387)
chr8 (18-124)||(1952733-1952833)
chr8 (205-256)||(1952048-1952099)
chr8 (77-124)||(28526295-28526342)
chr8 (24-126)||(32564227-32564330)
chr8 (37-125)||(41122512-41122601)
chr8 (77-124)||(28006324-28006371)
chr8 (77-124)||(28063627-28063674)
chr8 (69-124)||(30134855-30134910)
chr8 (76-122)||(9625518-9625564)
chr8 (18-71)||(41121370-41121423)
chr8 (77-124)||(31074363-31074410)
chr8 (69-120)||(41754561-41754612)
chr8 (18-64)||(5737822-5737868)
chr8 (28-69)||(39138453-39138495)
chr8 (77-119)||(41754221-41754263)
chr8 (16-69)||(33315117-33315170)
chr8 (71-124)||(36033032-36033085)
[»] chr3 (15 HSPs)
chr3 (18-256)||(17700787-17701025)
chr3 (18-256)||(36279934-36280172)
chr3 (18-256)||(48809274-48809510)
chr3 (18-256)||(55389087-55389324)
chr3 (18-256)||(53958719-53958956)
chr3 (18-255)||(52317182-52317418)
chr3 (18-256)||(48573253-48573494)
chr3 (18-122)||(36279212-36279317)
chr3 (18-124)||(48574207-48574314)
chr3 (18-124)||(52318073-52318180)
chr3 (47-124)||(17701676-17701754)
chr3 (18-124)||(55388327-55388436)
chr3 (18-103)||(36827231-36827318)
chr3 (18-56)||(2591894-2591932)
chr3 (77-123)||(48808690-48808736)
[»] chr2 (24 HSPs)
chr2 (18-256)||(2911105-2911342)
chr2 (18-256)||(31091144-31091382)
chr2 (18-256)||(32765898-32766135)
chr2 (18-256)||(39015273-39015511)
chr2 (18-256)||(24459071-24459309)
chr2 (16-256)||(39999951-40000192)
chr2 (151-227)||(14705021-14705097)
chr2 (18-124)||(32765205-32765312)
chr2 (16-124)||(31090423-31090532)
chr2 (18-120)||(24458328-24458431)
chr2 (25-124)||(39256762-39256862)
chr2 (18-124)||(2910368-2910475)
chr2 (18-122)||(38984742-38984848)
chr2 (18-116)||(14704265-14704363)
chr2 (77-126)||(18675452-18675501)
chr2 (18-124)||(39016142-39016246)
chr2 (17-121)||(7412501-7412602)
chr2 (76-124)||(38855949-38855997)
chr2 (71-126)||(38854249-38854304)
chr2 (18-63)||(33162033-33162078)
chr2 (80-122)||(34582379-34582421)
chr2 (71-124)||(26585401-26585454)
chr2 (15-51)||(12004779-12004815)
chr2 (88-124)||(15440864-15440900)
[»] chr4 (14 HSPs)
chr4 (18-256)||(47878119-47878339)
chr4 (18-135)||(54574693-54574810)
chr4 (18-149)||(42278727-42278858)
chr4 (18-124)||(19051106-19051210)
chr4 (18-117)||(20599647-20599749)
chr4 (18-124)||(47874823-47874930)
chr4 (77-124)||(24745782-24745829)
chr4 (18-114)||(4702957-4703052)
chr4 (22-122)||(42278313-42278413)
chr4 (18-85)||(6039389-6039457)
chr4 (71-124)||(24753282-24753335)
chr4 (77-126)||(21622192-21622241)
chr4 (76-124)||(21622849-21622897)
chr4 (21-92)||(4702054-4702126)
[»] scaffold0767 (2 HSPs)
scaffold0767 (18-124)||(5985-6088)
scaffold0767 (18-124)||(5870-5977)
[»] chr6 (3 HSPs)
chr6 (69-124)||(30748307-30748362)
chr6 (18-123)||(31239716-31239822)
chr6 (77-122)||(30748243-30748288)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 14891017 - 14890779
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  14891017 taaatgtcatctaatcctctcttttgttcaaaattaatcttccattaaacacaacttattgttaggtccctgactgtgcatatttactatcagttaggtc 14890918  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14890917 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 14890818  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  14890817 ttaatcaagatctcaagatatattcaaatgataattcat 14890779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 28590967 - 28590730
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||||||||||||| ||    
T  28590967 taaatgtcatataattctcttttttgttcaaaattaatcttccattaaacacaacttactgttag-tccctgactgtgcatacttactatcagttagctc 28590869  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28590868 actgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 28590769  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  28590768 ataatcaagagctcaagatatattcaaatgataattcat 28590730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 256
Target Start/End: Original strand, 544921 - 545153
Alignment:
Q  24 tcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgac 123  Q
    |||| ||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  544921 tcatataattatctcttttgttcaaaattaatctttcattaaacacaacttattgttaggtccctgactgtgcatacttactatcagttaggtccctaac 545020  T
Q  124 aatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacattaatc 223  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||    
T  545021 aatgaattaacaaatctattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagtatacggtaatc 545120  T
Q  224 aagagctcaagatatattcaaatgataattcat 256  Q
    |||||||||||||||||||||||||||||||||    
T  545121 aagagctcaagatatattcaaatgataattcat 545153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 25590696 - 25590936
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||     
T  25590696 cataaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacaaatcttattgttaggtccctaactgtgcatacttactatcagttaga 25590795  T
Q  116 tccctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcata 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||    
T  25590796 tccctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatcattaccgcataggtctgagcata 25590895  T
Q  216 cattaatcaagagctcaagatatattcaaatgataattcat 256  Q
    || |||||||||||||||||||| |||||||||||||||||    
T  25590896 caataatcaagagctcaagatatgttcaaatgataattcat 25590936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 40611528 - 40611766
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  40611528 taaatgtcatataattctctcttttgttcaaaattaatctttcattaaacacaacttagtgttaggtccctgactgtacatacttactatcagttaggtc 40611627  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  40611628 ccagacaatgaattggcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagtatacg 40611727  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||| | ||||||||||||||||||||||    
T  40611728 gtaatcaagagctcgatatatattcaaatgataattcat 40611766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 32640556 - 32640794
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||| ||| |||| ||||||||||||||||| |||    
T  32640556 taaatgtcatctaattctctcttttattcaaaattaatcttccattaaacacaacttactgttaggtccttgattgtgcatacttactatcagttatgtc 32640655  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  32640656 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacataataattcatatctctaccctgtaggtctgagcataca 32640755  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||  | ||||||||||||||    
T  32640756 ataatcaagagctcaagatattctgaaatgataattcat 32640794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 8075689 - 8075452
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||| ||||| || |||||||| |||    
T  8075689 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacacaacttactgttaggtcc-tgactgtgcatactaaccatcagttaagtc 8075591  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||     
T  8075590 actgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacataataattcatatctctaccccgtatgtctgagcatacc 8075491  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||| ||||||| ||||||||||||||||||||||    
T  8075490 gtaatcaatagctcaacatatattcaaatgataattcat 8075452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 4593964 - 4593723
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| ||    
T  4593964 taaatgtcatctaattatctcttttgttcaaaattaatcttccattaaacataacttaatgttaggtccctgactgtgcatacttactatcagttagatc 4593865  T
Q  118 cctgac-aatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcat-- 214  Q
    |||||| ||||||||| |||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||      
T  4593864 cctgacaaatgaattaacaaatccaatagcatctactactcttgattattgttatattcacgtgataattcatatctctacctcgtagatctcagcatac 4593765  T
Q  215 acattaatcaagagctcaagatatattcaaatgataattcat 256  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  4593764 acagtaatcaagagctcaagatatattcaaatgataattcat 4593723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 2466628 - 2466440
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||| ||||||||||||||||   || |||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  2466628 taaatgtcatctaattctcttttttgttcaaaattaaatctccattaaacacaacttattgttaggtctctgactgtgcatacttactatcagttatgtc 2466529  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggt 206  Q
    | |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2466528 cttgacaatgaattagaaaatccattagcatctattactgttgattattgttatattcatatgataattcatatctctaccccgtaggt 2466440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 4593122 - 4593229
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||  |||| |||| ||| || ||||||||||||||||||| ||||||||||||||||||||    
T  4593122 taaatgtcatctaattatctcttttgttcaaaatcaatctttcattaaacaccaacatactgttaggtccctgactgtgcatacttactatcagttaggt 4593221  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  4593222 ccctgaca 4593229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 40612514 - 40612407
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||| |||||||||| ||||||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||| ||||||||||||||||||||    
T  40612514 taaatatcatctaattatctcttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtccctgactgtgcatacttactatcagttaggt 40612415  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  40612414 ccctgaca 40612407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 545899 - 545794
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||  ||| ||||||| |||| |||| ||| || ||||||||||||||||||| |||||||||||||||||||     
T  545899 taaatgtcatctaattatctcttttgttctgaatcaatcttccattaaacactaacctactgttaggtccctgactgtgcatacttactatcagttaggc 545800  T
Q  117 ccctga 122  Q
    ||||||    
T  545799 ccctga 545794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 2464937 - 2465044
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||| | ||||||| |||| |||| ||| || ||||||||||||||||||| ||| ||||||||||||||||    
T  2464937 taaatgtcatctaattatcttttttgttcaaagtcaatcttccattaaacaccaacctactgttaggtccctgactgtgcatatttactatcagttaggt 2465036  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  2465037 cactgaca 2465044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 8074718 - 8074825
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| |||||| |||||||||| ||||||  |||| |||| ||| || |||||| |||||||||||| ||||||||||| ||||||||    
T  8074718 taaatgtcatctaattatctcttctgttcaaaatcaatcttacattaaacaccaacctactgttagctccctgactgtgcatacttactataagttaggt 8074817  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  8074818 ccctgaca 8074825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 9537300 - 9537410
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatctt-ctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagtta 113  Q
    |||||||||||||||||||||||||||||||||| | |||||| | |||| ||| ||||||| | |||||||| |||||||| ||||||||||||| |||    
T  9537300 cataaatgtcatctaattctctcttttgttcaaagtcaatcttcccattaaacaccaacttactattaggtccttgactgtgcatacttactatcattta 9537399  T
Q  114 ggtccctgaca 124  Q
    |||| ||||||    
T  9537400 ggtctctgaca 9537410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 32641596 - 32641491
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    |||||||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| || |||||||||||| |||||| ||||||| ||||||||||||||    
T  32641596 aatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtccctaactgtgcatacttattatcagttaggtcc 32641497  T
Q  119 ctgaca 124  Q
     |||||    
T  32641496 ttgaca 32641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 28589991 - 28590077
Alignment:
Q  39 ttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||| ||||||| |||| |||| ||| || ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  28589991 ttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtctctgactgtgcatacttactatcagttaggtccctgaca 28590077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 2465754 - 2465696
Alignment:
Q  198 cccgtaggtctgagcatacattaatcaagagctcaagatatattcaaatgataattcat 256  Q
    |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  2465754 cccgtaggtctgagcatacaataatcaagagatcaagatatatacaaatgataattcat 2465696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19186104 - 19186055
Alignment:
Q  73 ttattgttaggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19186104 ttattgttagatccctgactgtgtatacttactatcagttaggtccctga 19186055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 9537910 - 9537838
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctg 89  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| |||| ||| ||||||| |||||||||||||    
T  9537910 taaatgttatctaattctctcctttgttcaaaatcaatcttccattaaacatcaacttaatgttaggtccctg 9537838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 14890037 - 14890144
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaact-tattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||||||||| || | ||||||||||||||| ||||||| |||| |||| | | |  |||||||||||||| |||| ||||||||||| |||| |||    
T  14890037 taaatgtcatctagttatttcttttgttcaaaatcaatcttccattaaacaccaatctgctgttaggtccctgattgtgcatacttactattagtttggt 14890136  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  14890137 ctctgaca 14890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 31946859 - 31946804
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||    
T  31946859 caacttattgttaggtcactgactctgtatacttactgtcatttaggtccctgaca 31946804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 19186034 - 19185981
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||    
T  19186034 acttactgttaggtctctgactttgtatacttactgtcagttaggtccctgaca 19185981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 27720727 - 27720827
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caac-ttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    ||||| |||| ||||||||||||||||||||||| ||||||  |||| ||| |||| ||| | |||||||||| | |||| ||||||| |||||||||||    
T  27720727 taaatatcatataattctctcttttgttcaaaatcaatctttcattaaacatcaactttactattaggtccctaattgtgcatacttattatcagttagg 27720826  T
Q  116 t 116  Q
    |    
T  27720827 t 27720827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 23773344 - 23773301
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  23773344 acttattgttaggtccctgactgtgcatacttactattagttag 23773301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 31946933 - 31946882
Alignment:
Q  67 cacaacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    ||||| ||| |||||| |||||||||||||||||||||| ||||||||||||    
T  31946933 cacaatttactgttagatccctgactgtgtatacttactgtcagttaggtcc 31946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 13651039 - 13650990
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    ||||||| |||||||||||||||| || ||||||||||| ||||||||||    
T  13651039 caacttactgttaggtccctgactatgcatacttactattagttaggtcc 13650990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 19183256 - 19183310
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||    
T  19183256 caacttactgttaggtccctgactgtg-atacttactgtcagttaagttcctgaca 19183310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 18004922 - 18004968
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctatta 64  Q
    ||||||| |||||||||||||| |||||||| |||||||||| ||||    
T  18004922 taaatgttatctaattctctctcttgttcaatattaatcttccatta 18004968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 23773232 - 23773186
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||| || || |||||||| |||||||||    
T  23773232 acttattgttaggtccctgactatgcatgcttactattagttaggtc 23773186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 21069553 - 21069625
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctg 89  Q
    |||||||||||||||||||| |||| |||||||| ||| ||  |||| ||| ||||||| ||||||| |||||    
T  21069553 taaatgtcatctaattctctattttcttcaaaatcaatatttcattaaacaccaacttactgttaggcccctg 21069625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 42477648 - 42477886
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  42477648 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaagcacaacttaatgttaggtccctgactgtgcatacttactatcagttaggtc 42477747  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42477748 cctgacaatgaattagcaaatctattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 42477847  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||| ||||||| ||||||||||||||||||||||    
T  42477848 ataatcaaaagctcaaaatatattcaaatgataattcat 42477886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 35727966 - 35728204
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| || ||||||||| |||||||||||||||||||||    
T  35727966 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacacaatttattgttagatcactgactgtgcatacttactatcagttaggtc 35728065  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35728066 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctacctcgtaggtctgagcataca 35728165  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     | |||||||| |||||||||||||||||||||||||||    
T  35728166 gtgatcaagagttcaagatatattcaaatgataattcat 35728204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 7258543 - 7258780
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||| ||||| |||||| |||||||||||| ||||||||    
T  7258543 taaatgtcatctaattctctcttttgttcaaa-ttaatcttccattaaacacaatttattgttagatccctaactgtgcatacttactatctgttaggtc 7258641  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7258642 catgacaattaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatatttaccccgtaggtctgagcataca 7258741  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  7258742 ataatcaagagctcaagatatattcaaatgataattcat 7258780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 48788526 - 48788290
Alignment:
Q  22 tgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtccctg 121  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  48788526 tgtcatttaattctctcttttgttcaaaattaatcttccattaaacacaacttattgttaggtccctgactgtgcatacttactatcagttaggtccctt 48788427  T
Q  122 acaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacattaa 221  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||    
T  48788426 acaatgaattagcaaatacattagcatctattattcttgattattgttatattcacatgataattcatatctctacctcgtagg-ccgagcatacaataa 48788328  T
Q  222 tcaagagctcaagatatattcaaatgataattcatctc 259  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  48788327 tcaagagctcaagatatattcaaatgataattcgtctc 48788290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 48646316 - 48646555
Alignment:
Q  18 taaatgtcatct-aattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  48646316 taaatgtcatcttaattctcttttttgttcaaaattaatcttccattaaatacaacttactgttaggtccctgactgtgcatacttactatcagttaggt 48646415  T
Q  117 ccctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatac 216  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  48646416 ccctgacaatgaataagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctcaaccccataggtccgagcatac 48646515  T
Q  217 attaatcaagagctcaagatatattcaaatgataattcat 256  Q
    | ||| |||||||||||| |||||||||||||||| ||||    
T  48646516 agtaaccaagagctcaaggtatattcaaatgataaatcat 48646555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 44333405 - 44333643
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||| ||| ||||||||||| ||||||||| |||||||||| |  | ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  44333405 taaatttcaactaattctctcatttgttcaagattaatcttccaacaaacacaacttattgttaggtccttgactgtgcatacttactatcagttaggtc 44333504  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |||||||    
T  44333505 cctgacgatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctacctcgcaggtttgggcataca 44333604  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     |||||||||||| |||||||||||||||||||||||||    
T  44333605 ataatcaagagcttaagatatattcaaatgataattcat 44333643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 45583856 - 45584093
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    |||||||||||||| ||| ||||| ||||||| ||||||| |||| |||| |||||| |||||||||||||||| || |||||||||||||||||||||     
T  45583856 aatgtcatctaattatcttttttgatcaaaatcaatcttccattaaacaccaacttactgttaggtccctgactatgcatacttactatcagttaggtca 45583955  T
Q  119 ctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacat 218  Q
     |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||     
T  45583956 ttgacaatgaattagcaaatcgattagcatctattactcttgattattgttatattcacatgataatttatatctctaccccgcaggtttgagcatacaa 45584055  T
Q  219 taatcaagagctcaagatatattcaaatgataattcat 256  Q
    |||||||||||||||||||||||||||| |||||||||    
T  45584056 taatcaagagctcaagatatattcaaatcataattcat 45584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 10895412 - 10895277
Alignment:
Q  121 gacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacatta 220  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  10895412 gacaatgaattagcaaatccattagcatttattactcttgattattgttatattcacatgataattcatatctctaccccataggtctgagcatacaata 10895313  T
Q  221 atcaagagctcaagatatattcaaatgataattcat 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  10895312 atcaagagctcaagatatattcaaatgataattcat 10895277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 10898928 - 10898829
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||| || ||||||| |||||||||||||    
T  10898928 taaatgtcatctaattctctcatttgttcaaaattaatcttccattaaacacaacttactgttaggtccctgactatgcatacttagtatcagttaggtc 10898829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 39708389 - 39708495
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||| |||  |||||| |||||||||||||||||||||||||||||||||||| |||    
T  39708389 taaatgtcatctaattctctcttttgttcaaaatcgatcttccattaaacattaacttactgttaggtccctgactgtgtatacttactatcagtttggt 39708488  T
Q  117 ccctgac 123  Q
    |||||||    
T  39708489 ccctgac 39708495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 30924872 - 30924763
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  30924872 taaatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctattgttaggtctctgactgtgcatacttactatcagttaggt 30924773  T
Q  117 ccctgacaat 126  Q
    ||||||||||    
T  30924772 ccctgacaat 30924763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 7259548 - 7259441
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||| ||||||| ||| ||||| ||||||| |||||||||||| ||| |||  |||| ||||||||||||||||| ||||||||||||||||||||    
T  7259548 taaatgtcctctaattatcttttttgctcaaaatcaatcttctattaaacatcaatctattattaggtccctgactgtgcatacttactatcagttaggt 7259449  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  7259448 ccctgaca 7259441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 12223544 - 12223436
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||| |||| ||| ||||||||| |||||||||||| |||| ||||||||||||| ||||    
T  12223544 cataaatgtcatctaattacctctttagttcaaaatcaatcttccattaaacaccaacttattattaggtccctgaatgtgcatacttactatca-ttag 12223446  T
Q  115 gtccctgaca 124  Q
    ||||||||||    
T  12223445 gtccctgaca 12223436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 32794648 - 32794543
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaa-cttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    ||||||||||||| |||||||||||||||||| ||| ||| |||| |||||| |||||||||||||||||||||||| ||||||||||| | |||| ||     
T  32794648 aatgtcatctaatgctctcttttgttcaaaatcaattttccattaaacacaaacttattgttaggtccctgactgtgcatacttactattaattagttcg 32794549  T
Q  119 ctgaca 124  Q
    ||||||    
T  32794548 ctgaca 32794543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 45584352 - 45584250
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||| |||| ||| |||| || ||||||||||||||||||| ||||||||||||||||| ||    
T  45584352 taaatgtcatctaattatcttttttgatcaaaatcaatcttccattaaacatcaacctactgttaggtccctgactgtgcatacttactatcagttaagt 45584253  T
Q  117 ccc 119  Q
    |||    
T  45584252 ccc 45584250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 33607372 - 33607271
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacaca-acttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||||||||||||||| ||||| | ||||| |||| ||||  || || |||||||||||||||| || ||||||||||||||||||||    
T  33607372 taaatgtcatctaattctctcttttgtttaaaatcattcttccattaaacacctacctactgttaggtccctgactttgcatacttactatcagttaggt 33607273  T
Q  117 cc 118  Q
    ||    
T  33607272 cc 33607271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 48647298 - 48647191
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||| |||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| || |||||||||| ||| |||| ||||||||||| ||||||||    
T  48647298 taaatatcatctaattatctattttgttcaaaatcaatcttccattaaacaccaacctactgttaggtccttgattgtgcatacttactattagttaggt 48647199  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  48647198 ccctgaca 48647191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 12221569 - 12221666
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca--caacttattgttaggtccctgactgtgtatacttactatcagtta 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || |   |||||| |||||||||| ||| |||| ||||||| |||||||||    
T  12221569 taaatgtcatctaattctctcttttgttcaaaattaatcttttattggatatcaaacttactgttaggtccgtgattgtgcatacttattatcagtta 12221666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 35728949 - 35728843
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagac-acaacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||  |||| || ||| ||||||||| | ||| ||||||||||||||| ||||    
T  35728949 taaatgtcatctaattatctcttttgttcaaaatcaatcttccattaaactgcaacctactgtgaggtccctggc-gtgcatacttactatcagtcaggt 35728851  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  35728850 ccctgaca 35728843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 10894610 - 10894718
Alignment:
Q  18 taaatgtcatctaat-tctctcttttgttcaaaattaatcttctattagacacaact-tattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    ||||||||||||||| ||| | |||| |||||||| |||||||||||| |||| | | || ||||||||  ||||||||| |||||||||| ||||||||    
T  10894610 taaatgtcatctaatatctttttttttttcaaaatcaatcttctattaaacaccaatctaatgttaggtatctgactgtgcatacttactaccagttagg 10894709  T
Q  116 tccctgaca 124  Q
    |||||||||    
T  10894710 tccctgaca 10894718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 44529556 - 44529663
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| |||| || |||| | | ||||||  | ||| ||||||||||||| ||||||||||||| ||| ||    
T  44529556 taaatgtcatctaattatctcttttgttcaaaatcaatcatccattaaaaatcaacttcattttaagtccctgactgtgcatacttactatcatttaagt 44529655  T
Q  117 ccctgaca 124  Q
    || |||||    
T  44529656 ccatgaca 44529663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 8870342 - 8870397
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  8870342 acttattattaggtccctgactgtgtatagttactgtcagttaggtccctaacaat 8870397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 34710246 - 34710156
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactat 107  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||| ||| ||||||||  |||||| |  |||||||||||    
T  34710246 taaatgtcatctaattctctcttttgttcaaaattaatttttcattaaacatcaatttactgttaggtatctgactatacatacttactat 34710156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 32793438 - 32793543
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    |||||| ||||||||||| ||||||||||||| ||||||  |||| | | |||||||||  || ||| |||| |||| |||||||||||||||||| ||     
T  32793438 aatgtcttctaattctctattttgttcaaaatcaatctttcattaaataccaacttatttgtaagtctctgattgtgcatacttactatcagttagatct 32793537  T
Q  119 ctgaca 124  Q
    ||||||    
T  32793538 ctgaca 32793543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 44334313 - 44334213
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| | | ||  |||| ||| |||| || | |||||| ||| |||||| ||||||||||||||||||||    
T  44334313 taaatgtcatctaattatctcttttgttcaaaatcattatttcattaaacaccaacctactattaggt-ccttactgtgcatacttactatcagttaggt 44334215  T
Q  117 cc 118  Q
    ||    
T  44334214 cc 44334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6680376 - 6680335
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttc 59  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  6680376 taaatatcatctaattctctcttttgttcaaaatcaatcttc 6680335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 8879302 - 8879249
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||| ||||||    
T  8879302 acttattattaggttcctgactgtgtatacttactgtcatttaggtctctgaca 8879249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 24287789 - 24287842
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||| ||||||||||| ||||| || |||||||||||||||| |||||||||||    
T  24287789 acttgttgttaggtccttgactatgcatacttactatcagtttggtccctgaca 24287842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 39708486 - 39708526
Alignment:
Q  82 ggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  39708486 ggtccctgactatgtatacttactatcagtttggtccctga 39708526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 8870828 - 8870785
Alignment:
Q  81 aggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||    
T  8870828 aggtccctgactgtgtatatttattatcagttagatccctgaca 8870785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 48787611 - 48787658
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  48787611 tgttaggtcactgactgtgcatatttactatcagttaggttcctgaca 48787658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 19433768 - 19433666
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    |||||||| ||||| ||| ||||||||||  | ||||||| |||| |||| |||||| | |||||||||| | |||| |||||||||||||||||| ||     
T  19433768 aatgtcatttaattatctattttgttcaa--tcaatcttccattaaacaccaacttactattaggtccctta-tgtgcatacttactatcagttagatct 19433672  T
Q  119 ctgaca 124  Q
    ||||||    
T  19433671 ctgaca 19433666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 330077 - 330114
Alignment:
Q  81 aggtccctgactgtgtatacttactatcagttaggtcc 118  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  330077 aggttcctgactgtgcatacttactatcagttaggtcc 330114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 25621515 - 25621462
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||| ||||||||| | ||| |||| ||||||||||||||||||||| ||||||    
T  25621515 acttgttgttaggttcttgattgtgcatacttactatcagttaggtctctgaca 25621462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 34707880 - 34707913
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaat 51  Q
    |||||||||| |||||||||||||||||||||||    
T  34707880 taaatgtcatataattctctcttttgttcaaaat 34707913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 9340895 - 9340659
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9340895 taaatgtcatctaattttctcttttgttcaaaattaatcttccattaaacacaacttactgttaggtccctgactgtgcatacttactatcagttaggtc 9340796  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  9340795 cctgacaatgaattagcaaatccattagcatctattactcttgattattcttatattcacatgataattcatatctctaccccgtaggtctaaacataca 9340696  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattc 254  Q
     ||||||||||||||||||||||||||||||||||||    
T  9340695 ataatcaagagctcaagatatattcaaatgataattc 9340659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 7945429 - 7945191
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  7945429 taaatgtcatataattctctcttttgttcaaaattaatcttccattaaacacaacttattgttaggtctctgactgtgcatacttactatcagttaggtc 7945330  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  7945329 cctgacaatgaattaggaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctttaccccgtaagtctgagcataca 7945230  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     |||||||||||||||||||| |||||||||||||||||    
T  7945229 ataatcaagagctcaagatattttcaaatgataattcat 7945191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 52440415 - 52440177
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||| |||||||||||  |||| | |||||||||||||||||||||    
T  52440415 taaatgtcatctaattctctcttttgtttaaaattaatctttcattaaacacaacttagtgttaggtccccaactgcgcatacttactatcagttaggtc 52440316  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52440315 cttgacaatgaattagcaaatccattagcttctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 52440216  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||| ||| |||||||||||||||||||||| |||||||    
T  52440215 ataaccaatagctcaagatatattcaaatgacaattcat 52440177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 32664781 - 32664941
Alignment:
Q  29 taattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgacaatga 128  Q
    ||||||||||||||||| ||||||||||||  |||| ||||  |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  32664781 taattctctcttttgtttaaaattaatctttcattaaacacggcttactgttaggtccctgattgtgcatacttactatcagttaggtccctgacaatga 32664880  T
Q  129 attagcaaatccattaacatctattactcttgattattgttatattcacatgataattcat 189  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32664881 attaggaaatccattagcatctattactcttgattattgttatattcacatgataattcat 32664941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 32665632 - 32665525
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||  ||| |||| || |||||||||||||||||   | ||||||||||||||||||    
T  32665632 taaatgtcatctaattatcttttttgttcaaaatcaatcttctattcaacaccaacctactgttaggtccctgactgcacacacttactatcagttaggt 32665533  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  32665532 ccctgaca 32665525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 51450292 - 51450391
Alignment:
Q  22 tgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggtccct 120  Q
    |||||||||||| ||||||||||||||||| ||||||| |||| ||| ||||||| | ||||||| || | |||| ||||||||||||||||||||||||    
T  51450292 tgtcatctaattatctcttttgttcaaaatcaatcttccattaaacaccaacttactattaggtctcttagtgtgcatacttactatcagttaggtccct 51450391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 34088312 - 34088213
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||| |||||||||||||||||||||||||||||||||| | || |||  |||||| |||||| |  ||||||||| ||||||||||||||||||||    
T  34088312 taaatgttatctaattctctcttttgttcaaaattaatcttccactaaacattaacttactgttagat--ctgactgtgcatacttactatcagttaggt 34088215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 52439729 - 52439835
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| |||| ||| |||| || ||||||||||||||||| | ||||||||||||| ||||      
T  52439729 taaatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtccctgactgcgcatacttactatcaattagac 52439828  T
Q  117 ccctgac 123  Q
    |||||||    
T  52439829 ccctgac 52439835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 6612698 - 6612803
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||||||| ||||||| ||||| ||||||| |||| ||| ||||||| |||| | ||  | |||||| ||||||||||||||||||||    
T  6612698 taaatgtcatctaattctcttttttgtttaaaatcaatcttccattaaacaccaacttactgtttgatctttaactgtgcatacttactatcagttaggt 6612797  T
Q  117 ccctga 122  Q
    ||||||    
T  6612798 ccctga 6612803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 6613837 - 6613736
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||| |||||||||||||||| |||||| ||| |||||||| ||| ||||||| | ||| |||||||| | || ||||||| ||||||||||||    
T  6613837 taaatgtcatataattctctcttttgtacaaaatcaattttctattaaacatcaacttactattaagtccctgattatgcatacttattatcagttaggt 6613738  T
Q  117 cc 118  Q
    ||    
T  6613737 cc 6613736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25038146 - 25038240
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagtt 112  Q
    |||| ||||| ||||||| |||||||||||| |  ||||||| |||| |||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  25038146 taaaagtcatataattctttcttttgttcaagaacaatcttccatta-acaccaacttattgttaggtcccttactgtgcatacttactatcagtt 25038240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25043358 - 25043452
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagtt 112  Q
    |||| ||||| ||||||| |||||||||||| |  ||||||| |||| |||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  25043358 taaaagtcatataattctttcttttgttcaagaacaatcttccatta-acaccaacttattgttaggtcccttactgtgcatacttactatcagtt 25043452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 34085795 - 34085893
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagac-acaacttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    |||||||||||||||||| ||||||||||||||| |||||||  |||  | |||||||| |||||  ||| ||||| || ||| |||||||||||||||    
T  34085795 taaatgtcatctaattctttcttttgttcaaaatcaatcttcctttaatcaacaacttactgttatatccttgactatgcatatttactatcagttagg 34085893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 534351 - 534308
Alignment:
Q  73 ttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||| |||||||||||||||||| ||||||||||    
T  534351 ttattgttaggtccttgactgtgtatacttactgtcagttaggt 534308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 7944422 - 7944534
Alignment:
Q  21 atgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttag--------gtccctgactgtgtatacttactatcagt 111  Q
    ||||||||||||| ||| |||| |||||||| ||||||| |||| |||| ||| |||||||||        ||| |||| |||| |||||||||||||||    
T  7944422 atgtcatctaattatcttttttattcaaaatcaatcttccattaaacaccaacctattgttagttttttaggtctctgaatgtgcatacttactatcagt 7944521  T
Q  112 taggtccctgaca 124  Q
    |||||||||||||    
T  7944522 taggtccctgaca 7944534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 23703955 - 23704006
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac 69  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||| ||||    
T  23703955 taaatgtcatctaattatctcttttgttcaaaattaattttccattaaacac 23704006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 44720647 - 44720592
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    |||| ||||||| || || ||||||||||||||||||||||||||||| |||||||    
T  44720647 acttgttgttagatctctaactgtgtatacttactatcagttaggtccttgacaat 44720592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 8975508 - 8975554
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgac 123  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||    
T  8975508 tgttaggtcctcgactgcgtatacttactatcagttaggtccctgac 8975554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 22856953 - 22856991
Alignment:
Q  20 aatgtcatctaattctctcttttgttcaaaattaatctt 58  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  22856953 aatgtcatctaattctctcttttgttaaaaatcaatctt 22856991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 29766249 - 29766298
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    |||||||||  | |||||||||||||||| |||||||||||| |||||||    
T  29766249 tgttaggtctgtaactgtgtatacttactgtcagttaggtccttgacaat 29766298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 35178660 - 35178422
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||| |||||| ||| ||||||||| |||||||    
T  35178660 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacacaacttaccgttaggtccctcactgtgcatatttactatcaattaggtc 35178561  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35178560 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtatgagcataca 35178461  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  35178460 ataatcaagagctcaagatatattcaaatgataattcat 35178422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 10406459 - 10406697
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10406459 taaatgtcatctaattctctcttttgttcaaaattaatcttctattaaacacaacttattgttaggtccctgactgtgcatacttactatcagttaggtc 10406558  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||   |||| | ||||||||| ||||||    
T  10406559 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattaacatgataattcatataaataccacataggtctgaacataca 10406658  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     |||| |||||||||||||||||||||||||||||||||    
T  10406659 ataataaagagctcaagatatattcaaatgataattcat 10406697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 32898300 - 32898193
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| |||||||||| || ||||||| |||| |||| ||| || ||||||||| ||||||||| ||||||||||||||||||||    
T  32898300 taaatgtcatctaattatcttttttgttcaatatcaatcttccattaaacaccaacctactgttaggtctctgactgtgcatacttactatcagttaggt 32898201  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  32898200 ccctgaca 32898193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 5965273 - 5965172
Alignment:
Q  22 tgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtccct 120  Q
    |||||||||||| ||||||||||||||||| ||||||| |||| |||| |||||| ||||| |||| |||||||| ||||||||||||| ||||||||||    
T  5965273 tgtcatctaattatctcttttgttcaaaatcaatcttccattaaacaccaacttagtgttaagtccatgactgtgcatacttactatcaattaggtccct 5965174  T
Q  121 ga 122  Q
    ||    
T  5965173 ga 5965172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 5737130 - 5737236
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||   |||||||||||| |||| |    
T  5737130 taaatgtcatctaattctccctttttttcaaaattaatcttccattaaacaccaacttattgttaggtccctgactgt-actacttactatcaattagat 5737228  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  5737229 ctctgaca 5737236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 10407439 - 10407332
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||| |||| | ||||||||||| |||||||  ||||||||||||||||| ||    
T  10407439 taaatgtcatctaattatctcttttgttcaaaatcaatcttccattaaacaccaacctgttgttaggtccgtgactgttcatacttactatcagttaagt 10407340  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  10407339 cactgaca 10407332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 35177662 - 35177764
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||||| |||||| ||| ||||||||||||| |||||||||| | |||| ||| ||||||||||||||||||| || ||||||||||||||||||||    
T  35177662 taaatgtcacctaattatcttttttgttcaaaatcaatcttctataa-acaccaacctattgttaggtccctgactatgcatacttactatcagttaggt 35177760  T
Q  117 ccct 120  Q
    ||||    
T  35177761 ccct 35177764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 32563841 - 32563933
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatca 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||| ||| |||| ||||||| |||||    
T  32563841 taaatgccatctaattctctcttttgttcaaaattaatcttctattaaacactaacttactgttagatccatgattgtgcatacttaatatca 32563933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 28619387 - 28619279
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||| |||| || ||||| ||||||  |||| |||||||||| | ||||||| || |||||| ||||||||||||| |||||||    
T  28619387 taaatgtcatctaattctcttttttattaaaaatcaatctttcattaaacacaacttactattaggtctctaactgtgcatacttactatcatttaggtc 28619288  T
Q  118 cctgacaat 126  Q
      |||||||    
T  28619287 aatgacaat 28619279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 1952833 - 1952733
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagac-acaacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| || ||||| ||||||       ||||||||| ||| ||||||||||||||||    
T  1952833 taaatgtcatctaattatctcttttgttcaaaatcaatcttccattaaacaacaacctattgt-------ctgactgtgcatatttactatcagttaggt 1952741  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  1952740 ccctgaca 1952733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 1952048 - 1952099
Alignment:
Q  205 gtctgagcatacattaatcaagagctcaagatatattcaaatgataattcat 256  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1952048 gtctgagcatacagtaatcaagagctcaaaatatattcaaatgataattcat 1952099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 28526342 - 28526295
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28526342 tgttaggtccctgactgtgcatacttactatcagttaggtccctgaca 28526295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 32564330 - 32564227
Alignment:
Q  24 tcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    |||||||||||||||||||||||||||| | ||||| |||| | | ||||||||||| || ||   ||||||| ||| ||||||||||||||||| ||||    
T  32564330 tcatctaattctctcttttgttcaaaatcattcttccattaaataccaacttattgtaagatcttggactgtgaatatttactatcagttaggtctctga 32564231  T
Q  123 caat 126  Q
    ||||    
T  32564230 caat 32564227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 41122601 - 41122512
Alignment:
Q  37 tcttttgttcaaaattaatcttctattagacacaa-cttattgttaggtccctgactgtgtatacttactatcagttaggtccctgacaa 125  Q
    ||||||||||||||| ||||||| |||| |||||| |||||||||||| || ||| |||| ||||||||||||||  | |||||||||||    
T  41122601 tcttttgttcaaaatcaatcttccattaaacacaaacttattgttaggcccttgattgtgcatacttactatcagacaagtccctgacaa 41122512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 28006371 - 28006324
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  28006371 tgttaggtccctgattgtgcatacttactatcagttaggtccctgaca 28006324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 28063674 - 28063627
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  28063674 tgttaggtccctgattgtgcatacttactatcagttaggtccctgaca 28063627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 30134855 - 30134910
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  30134855 caacttactgttaggtctctgattgtgcatacttactatcagttaggtccctgaca 30134910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 9625518 - 9625564
Alignment:
Q  76 ttgttaggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  9625518 ttgttagatccctgactgtgtatgcttactgtcagttaggtccctga 9625564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 41121370 - 41121423
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaa 71  Q
    |||||| ||||||||||||||||||||||||||| ||||||  |||| ||||||    
T  41121370 taaatgccatctaattctctcttttgttcaaaatcaatctttcattaaacacaa 41121423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 31074363 - 31074410
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||||||||||||||| || |||||||||||||||||| ||| |||||    
T  31074363 tgttaggtccctgactatgcatacttactatcagttagatccttgaca 31074410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 41754612 - 41754561
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtccct 120  Q
    ||||||| | |||||||||||||| | |||||||||| ||||||||||||||    
T  41754612 caacttacttttaggtccctgactatatatacttactgtcagttaggtccct 41754561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 5737868 - 5737822
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctatta 64  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| ||||    
T  5737868 taaatgtcatctaattatctcttttgttcaaaatcaatattccatta 5737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 39138495 - 39138453
Alignment:
Q  28 ctaattctctcttttgttcaaaatt-aatcttctattagacac 69  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  39138495 ctaattctctcttttgttcaaaattaaatcttctattaaacac 39138453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 41754221 - 41754263
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccc 119  Q
    |||||| | |||||||||||||||||||| |||||||||||||    
T  41754221 tgttagatacctgactgtgtatacttactctcagttaggtccc 41754263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33315117 - 33315170
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac 69  Q
    |||| ||||||||||||||| | ||||| ||||||| |||||||||||| ||||    
T  33315117 catatatgtcatctaattctttgttttgatcaaaatcaatcttctattaaacac 33315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 36033032 - 36033085
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||| ||||||||| |||||||||| | ||||||||||||||| ||| ||||||    
T  36033032 acttgttgttaggttcctgactgtgcacacttactatcagttaagtctctgaca 36033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 17700787 - 17701025
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  17700787 taaatgtcatataattctctattttgttcaaaattaatcttccattaaacacaacttactgttaggtccctgactgtacatacttactatcagttaggtc 17700886  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17700887 cctgacaatgaattagcaaatctattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctaagcataca 17700986  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||| ||||||||||||||||||||||||    
T  17700987 ataatcaagagctccagatatattcaaatgataattcat 17701025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 36280172 - 36279934
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  36280172 taaatgtcatttaattctctcttttgttcaaaattaatcttccattaaacacaacttaatgttaggtccctgactgtgcataattactatcagttaggtc 36280073  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  36280072 cctgacaatgaattagcaaattcattagcatctattagtcttgattattgttatattcatataataattcataactctaccccgtaggtctgagcataca 36279973  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     |||||||||||||||||||||||||||| |||||||||    
T  36279972 ataatcaagagctcaagatatattcaaataataattcat 36279934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 48809510 - 48809274
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  48809510 taaatgtcatctaattctctattttgttcaaa-ttaatcttccattaaacacaatttattgttaggtccctaactgtgcatacttactatcagttaggtc 48809412  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  48809411 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatatcta-cccgtaggtctgagcataca 48809313  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||| ||||||||||||||    
T  48809312 ataatcaagagctcaagatatatttaaatgataattcat 48809274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 55389324 - 55389087
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  55389324 taaatgtcatctaattctctcttttgttcaaaattaatattccattaaacacaacttactcttaggtccctgactgtgcatatttactatcagttaggtc 55389225  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    | |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  55389224 catgacaatgaattagcaaatcaattatcatct-ttactcttgattattgttatattcacatgataattcatatctctattccgtaggtctgagcataca 55389126  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  55389125 ataatcaagagctcaagatatattcaaatgataattcat 55389087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 53958956 - 53958719
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  53958956 taaatgtcatctaattctctcttttgttcaaa-ttaatcttccattaaacacaacttgttgtaaggtccctgactgtgcatacttactatcagttaggtc 53958858  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||    
T  53958857 tctgacaatgaattagcagatccattagcatctattacttttgattattgttatattcacatgataattcatatctctaccttttaggtcttagcataca 53958758  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  53958757 ataatcaagagctcaagatatattcaaatgataattcat 53958719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 52317182 - 52317418
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||    
T  52317182 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacacaatttactgttaggtccctg-ctgtgcatacttacaatcagttaggtc 52317280  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  52317281 tctgacaataaattagcaaatccattagcatctattactcttgagtattgttatattcacataataattcatatctctaacccgtaggtctgagcataca 52317380  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattca 255  Q
     |||| ||||||||||||||||||||||||||||||||    
T  52317381 ataattaagagctcaagatatattcaaatgataattca 52317418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 48573253 - 48573494
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaac---ttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||   ||| ||||||||||||||||||  ||||||||||||||||||    
T  48573253 taaatgtcatctaattctctcttttattcaaaattaaccttccattaaacacaacaacttactgttaggtccctgactgtacatacttactatcagttag 48573352  T
Q  115 gtccctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcat 214  Q
    || | |||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48573353 gtgcatgacgatgaattagcaaatatattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctaagcat 48573452  T
Q  215 acattaatcaagagctcaagatatattcaaatgataattcat 256  Q
    ||| ||||||||||||||||||||||| ||||||||||||||    
T  48573453 acaataatcaagagctcaagatatattgaaatgataattcat 48573494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 36279212 - 36279317
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||| ||||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||| ||||||||||||||||||||    
T  36279212 taaaagtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtccctgactgtgcatacttactatcagttaggt 36279311  T
Q  117 ccctga 122  Q
    ||||||    
T  36279312 ccctga 36279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 48574314 - 48574207
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||| ||||| ||| ||||||||||||| |||| || |||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  48574314 taaatgtcatataattatcttttttgttcaaaatcaatcatccattaaacactaacctattgttaggtccctgactgtgcatacttactatcagttaggt 48574215  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  48574214 ctctgaca 48574207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 52318180 - 52318073
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| ||||||||||||  | |||||| ||||||||||||||||||||    
T  52318180 taaatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctattgttaggtctttaactgtgcatacttactatcagttaggt 52318081  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  52318080 ccctgaca 52318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 17701754 - 17701676
Alignment:
Q  47 aaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||| |||| |||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17701754 aaaattaatcttccattaaacaccaacctactgttaggtccctgactgtgcatacttactatcagttaggtccctgaca 17701676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 55388327 - 55388436
Alignment:
Q  18 taaatgtcatctaattctctctttt--gttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    |||||||||||||||| ||| ||||  ||||||||| ||| |||||||| |||| ||| || ||||| || |||||||||| ||||||||||||||||||    
T  55388327 taaatgtcatctaattatcttttttttgttcaaaatcaatattctattaaacaccaacctactgttaagttcctgactgtgcatacttactatcagttag 55388426  T
Q  115 gtccctgaca 124  Q
    ||||||||||    
T  55388427 gtccctgaca 55388436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 36827318 - 36827231
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaat-taatcttctattagac-acaacttattgttaggtccctgactgtgtatactta 103  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  |||| || ||||||| |||||| ||||||||||||  |||||||    
T  36827318 taaatgtcaactaattctctcttttgttcaaaatcaaatctttcattaaacaacaacttgttgttatgtccctgactgtacatactta 36827231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 2591894 - 2591932
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatc 56  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  2591894 taaatgtcatctaattctctcttttgttcaaaatcaatc 2591932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 48808690 - 48808736
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgac 123  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||    
T  48808690 tgttatgttcctgactgtgcatacttactatcagttaggtccctgac 48808736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 2911342 - 2911105
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||| |||||||||||||    
T  2911342 taaatgtcatctaattctctcttttgttcaaaattaatcttccattaaacacaacttactgttaggtctctgactgtgcatactta-tatcagttaggtc 2911244  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  2911243 tctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctcaaccccgtaggtctgaacataca 2911144  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||| ||||||||||||||||||||||    
T  2911143 ataatcaagagctcaatatatattcaaatgataattcat 2911105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 31091382 - 31091144
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||||| || ||||||| | |||||||||||||||||||||    
T  31091382 taaatgtcatctaattctctcttttgttcaaaattaatcattcattaaacacaacttactgttagatctctgactgcgcatacttactatcagttaggtc 31091283  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31091282 cctgacaatgaattagcaaatccattagcatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 31091183  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     |||||||||| |||| ||||||||||||||||||||||    
T  31091182 ataatcaagagttcaatatatattcaaatgataattcat 31091144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 32766135 - 32765898
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  32766135 taaatgtcatttaattttctcttttgttcaaaattaatcttccattaaacacaacttattgttaggtctctgactgtgcatacttactatcagttaggtc 32766036  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  32766035 cctgacaatgaattagcaaatcgattagcatctattactcttgattattgttatattcacatgataattcatatctcta-cccgcaggtctgagtataca 32765937  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||| ||||||||||||||    
T  32765936 ataatcaagagctcaagatatatttaaatgataattcat 32765898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 39015273 - 39015511
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||  |||||||| |||| ||||||  ||||||||    
T  39015273 taaatgtcatctaattctctcttttgtttaaaattaatcttccattaaacacaacttattgttaggtcagtgactgtgcatacctactattggttaggtc 39015372  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  39015373 cctgacaatgaattaacaaatccattatcatctattactcttgattgttgttatattcacatgataattcatatctcttccatgtaggtctgagcataca 39015472  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  39015473 gtaatcaagagctcaagatatattcaaatgataattcat 39015511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 24459309 - 24459071
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| |||||||||||| |||| | |||||||||||||||||||||    
T  24459309 taaatgtcgtctaattatctcttttgttcaaaattaatctttcattaaacacaacttactgttaggtccctaactgcgcatacttactatcagttaggtc 24459210  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
     ||||||||||||||||| |||||  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24459209 tctgacaatgaattagcatatccaccagcttctattactcttgattattgttatattcacatgataattcatatctctaccccgtaagtctgagcataca 24459110  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  24459109 ataatcaagagctcaagatatattcaaatgataattcat 24459071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 40000192 - 39999951
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||| || | ||||||||||| |||||||||||||| |||||||    
T  40000192 cataagtgtcatctaattctctcttttgttcaaaattaatctttcattaaacacaacttactgatcggtccctgactatgtatacttactatgagttagg 40000093  T
Q  116 tccctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcata 215  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  40000092 tccctgacaatgaattaaaaaatccattagtatctattactcttgattattgttatattcacatgataattcatatatctaccccgtagatctgagcata 39999993  T
Q  216 cattaatcaagagctcaagatata-ttcaaatgataattcat 256  Q
    |  |||||||| | |||||||||| |||||||||||||||||    
T  39999992 ctataatcaagtgttcaagatatatttcaaatgataattcat 39999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 14705097 - 14705021
Alignment:
Q  151 attactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacattaatcaaga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14705097 attactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcatacaataatcaaga 14705021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 32765205 - 32765312
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| |||| ||| |||| || ||||||||||||||||||| ||||||||||||||||||||    
T  32765205 taaatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacagcaacctactgttaggtccctgactgtgcatacttactatcagttaggt 32765304  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  32765305 ccctgaca 32765312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 31090423 - 31090532
Alignment:
Q  16 cataaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    |||||||||||||||||| || |||||||||||||| ||||||| |||| ||| |||| || | |||||| |||||||||| ||||||||||||| ||||    
T  31090423 cataaatgtcatctaattatcccttttgttcaaaatcaatcttccattaaacaccaacctactattaggttcctgactgtgcatacttactatcatttag 31090522  T
Q  115 gtccctgaca 124  Q
    ||||||||||    
T  31090523 gtccctgaca 31090532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 24458328 - 24458431
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| |||| ||| |||| || ||||||||| || |||||| ||||||||||||||||||||    
T  24458328 taaatgtcatctaattatcttttttgttcaaaatcaatcttccattaaacaccaacctactgttaggtctcttactgtgcatacttactatcagttaggt 24458427  T
Q  117 ccct 120  Q
    ||||    
T  24458428 ccct 24458431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 39256862 - 39256762
Alignment:
Q  25 catctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgac 123  Q
    ||||||||||||||||||||||||| | ||||||| |||| | || |||||| ||||||||| |||| |||| ||||||||||| |||||||||||||||    
T  39256862 catctaattctctcttttgttcaaagtcaatcttccattaaaaaccaacttactgttaggtcgctgattgtgcatacttactattagttaggtccctgac 39256763  T
Q  124 a 124  Q
    |    
T  39256762 a 39256762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 2910368 - 2910475
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||||||||||| || |||  |||||||||||| ||||||  |||| |||| ||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  2910368 taaatgtcatctagttatcttgtttgttcaaaatcaatcttacattaaacaccaacctactgttaggtccctgactgtgcatacttaatatcagttaggt 2910467  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  2910468 ccctgaca 2910475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 38984848 - 38984742
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttct-attagaca-caacttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    |||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||||||||||||| ||  ||| |||| ||||||| |||||||||||    
T  38984848 taaatgtcatctaattctctcttttgttcaaaataaatcttttcattaaacaccaacttattgttagatctttgattgtgcatacttattatcagttagg 38984749  T
Q  116 tccctga 122  Q
    || ||||    
T  38984748 tctctga 38984742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 14704265 - 14704363
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| | | ||||||||||||| ||||||| |||| ||| |||| ||||||||| ||||| |||||| ||||||||||||||||||||    
T  14704265 taaatgtcatctaattatattttttgttcaaaatcaatcttccattaaacaccaacctattgttagttccct-actgtgcatacttactatcagttaggt 14704363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 18675452 - 18675501
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18675452 tgttaggttcctgactgtgcatacttactatcagttaggtccctgacaat 18675501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39016246 - 39016142
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||| ||| ||||||||||||  ||||||| |||| |||| ||| ||  |||| ||||||||||||| ||| ||||||||||||||||    
T  39016246 taaatgtcatctaattatctattttgttcaaaac-aatcttccattaaacaccaaccta--gttaagtccctgactgtgcatatttactatcagttaggt 39016150  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  39016149 ctctgaca 39016142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 7412602 - 7412501
Alignment:
Q  17 ataaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttagg 115  Q
    ||||||||||| ||||| ||||||||||||||||| ||| ||||||||  || ||||||| ||||||||||   || ||| |||||||||||||||||||    
T  7412602 ataaatgtcatataattatctcttttgttcaaaatcaattttctattaaccaccaacttaatgttaggtcc---ac-gtgaatacttactatcagttagg 7412507  T
Q  116 tccctg 121  Q
    | ||||    
T  7412506 ttcctg 7412501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 38855997 - 38855949
Alignment:
Q  76 ttgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  38855997 ttgttaggtccctgacagtgcatacttactatcagttagttccctgaca 38855949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 38854304 - 38854249
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    |||| ||||||||||  |||||||| |||||||||||||| |||||||||||||||    
T  38854304 acttgttgttaggtctttgactgtgcatacttactatcagctaggtccctgacaat 38854249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 33162033 - 33162078
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctatt 63  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||    
T  33162033 taaatgtcatctaattatctcttttgttcaaaatcaatcttatatt 33162078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 34582421 - 34582379
Alignment:
Q  80 taggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    ||||||| ||||| || ||||||||||||||||||||||||||    
T  34582421 taggtccatgactatgcatacttactatcagttaggtccctga 34582379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 26585401 - 26585454
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||| ||||||||||| ||| |||| ||| ||||||| ||||||||||||||||    
T  26585401 acttgttgttaggtccttgattgtgcatatttactatgagttaggtccctgaca 26585454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 12004815 - 12004779
Alignment:
Q  15 tcataaatgtcatctaattctctcttttgttcaaaat 51  Q
    |||||||| |||||||||| |||||||||||||||||    
T  12004815 tcataaatctcatctaattatctcttttgttcaaaat 12004779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 15440864 - 15440900
Alignment:
Q  88 tgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  15440864 tgactgtgcatacttattatcagttaggtccctgaca 15440900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 47878339 - 47878119
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||| | |||||||||                  || |||||| ||    
T  47878339 taaatctcatctaattctctcttttgctcaaaattaatcttccattaaacacaacttactattaggtccc------------------ataagttagttc 47878258  T
Q  118 cctgacaatgaattagcaaatccattaacatctattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctgagcataca 217  Q
    || ||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  47878257 ccagacaatgaattagcaaatctattggcatttattactcttgattattgttatattcacatgataattcatatctctaccccgtaggtctaagtataca 47878158  T
Q  218 ttaatcaagagctcaagatatattcaaatgataattcat 256  Q
     ||||||||||||||||||||||||||||||||||||||    
T  47878157 ataatcaagagctcaagatatattcaaatgataattcat 47878119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 54574693 - 54574810
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  54574693 taaatgtcatctaattctctctttagttcaaaattaatcttccattaaacacaacttactgttaggtccctaactgtgcatacttactatcagttaggtc 54574792  T
Q  118 cctgacaatgaattagca 135  Q
    ||| ||||||||||||||    
T  54574793 cctaacaatgaattagca 54574810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 42278858 - 42278727
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||| ||| ||||| |||||||||||||||||||||    
T  42278858 taaatgtcatataattctctcttttgttcaaaattaatcttccattaaacacgacttactgttaggtctctggctgtgcatacttactatcagttaggtc 42278759  T
Q  118 cctgacaatgaattagcaaatccattaacatc 149  Q
     ||||||||||||||||||||| |||| ||||    
T  42278758 tctgacaatgaattagcaaatctattagcatc 42278727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 19051210 - 19051106
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggtc 117  Q
    ||||||||||||| ||| |||||||||||||||| ||||||| ||||  ||  ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  19051210 taaatgtcatctagttcgctcttttgttcaaaatcaatcttccattaatca--acttattgttaggtccctgactgtgcatatttactatcagttaggtc 19051113  T
Q  118 cctgaca 124  Q
     ||||||    
T  19051112 tctgaca 19051106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 20599749 - 20599647
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgt--taggtccctgactgtgtatacttactatcagttag 114  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| |||  ||||||||| |||||| ||||||| |||||||| |    
T  20599749 taaatgtcatctaattctctcttttgttcaaaatcaatcttccattaaacaccaacttactgttataggtccctaactgtgcatacttattatcagttgg 20599650  T
Q  115 gtc 117  Q
    |||    
T  20599649 gtc 20599647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 47874823 - 47874930
Alignment:
Q  18 taaatgtcatctaattctctctttt-gttcaaaattaatcttctattagacacaacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||| ||||| ||| |||| ||||||||| ||||||| |||| ||||||| || |||||||||||||||||   |||||||||||||||| |||    
T  47874823 taaatgtcatataattatctttttttgttcaaaatcaatcttccattaaacacaacctactgttaggtccctgactgaacatacttactatcagttgggt 47874922  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  47874923 ccctgaca 47874930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 24745829 - 24745782
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24745829 tgttaggtccctgactgtgtataattactatcagttaggtccctgaca 24745782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 4703052 - 4702957
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttag 114  Q
    |||||||||| |||||||||  |||||||||||| ||||||| |||| ||| ||||||| |||||  |||||||||||||||||||| ||||| ||||    
T  4703052 taaatgtcatttaattctct--tttgttcaaaatcaatcttccattaaacatcaacttactgttatatccctgactgtgtatacttattatcaattag 4702957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 42278313 - 42278413
Alignment:
Q  22 tgtcatctaattctctcttttgttcaaaattaatcttctattagacac-aacttattgttaggtccctgactgtgtatacttactatcagttaggtccct 120  Q
    |||||||||||  ||| ||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||  | ||| ||||||||||||||||||||    
T  42278313 tgtcatctaata-tcttttttgttcaaaataaatcttccattaaacaccaacctactgttaggtccctgactaagcatatttactatcagttaggtccct 42278411  T
Q  121 ga 122  Q
    ||    
T  42278412 ga 42278413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6039389 - 6039457
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtc 85  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||| ||| ||||||| |||||||||    
T  6039389 taaatgtcatataattctctcttttgttcaaaatcaatcttccattaaacatcaacttactgttaggtc 6039457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 24753335 - 24753282
Alignment:
Q  71 acttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    |||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  24753335 actttttgtgaggtccctgactgtgcataattactatcagttaggtccctgaca 24753282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 21622192 - 21622241
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctgacaat 126  Q
    ||||||||| ||||||||| ||||||||||||||||||||| || |||||    
T  21622192 tgttaggtctctgactgtgcatacttactatcagttaggtctctaacaat 21622241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 21622897 - 21622849
Alignment:
Q  76 ttgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||||||| ||| |||| |||||||||||||||||||||| |||||    
T  21622897 ttgttaggtccatgattgtgcatacttactatcagttaggtccatgaca 21622849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 4702054 - 4702126
Alignment:
Q  21 atgtcatctaattctctcttttgttcaaaattaatcttctattagacaca-acttattgttaggtccctgact 92  Q
    ||||||| ||||||||| ||||||||||||  ||||||| |||| ||||| ||||| |||||| | |||||||    
T  4702054 atgtcatttaattctctattttgttcaaaaacaatcttccattaaacacacacttactgttagattcctgact 4702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6088 - 5985
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||| ||||| ||||||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    ||||| ||||||||||||||||||||    
T  6088 taaatgtcatataattatctcttttgttcaaaatcaatcttcaattaaacaccaacttactgttaggtcc----ctgtgcatacttactatcagttaggt 5993  T
Q  117 ccctgaca 124  Q
    | ||||||    
T  5992 ctctgaca 5985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 5870 - 5977
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagaca-caacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||| |  |||| |  |||||| ||||||||| || ||||||||  |||||||    
T  5870 taaatgtcatctaattctctcttttgttcaaaatcaatcttccattaaacaccgtcttactcataggtctctgactgtgcatgcttactatatgttaggt 5969  T
Q  117 ccctgaca 124  Q
    ||||||||    
T  5970 ccctgaca 5977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 30748307 - 30748362
Alignment:
Q  69 caacttattgttaggtccctgactgtgtatacttactatcagttaggtccctgaca 124  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  30748307 caacttactgttaggtccctgactgtgtatacttactgttagttaggtccctgaca 30748362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 31239822 - 31239716
Alignment:
Q  18 taaatgtcatctaattctctcttttgttcaaaattaatcttctattagac-acaacttattgttaggtccctgactgtgtatacttactatcagttaggt 116  Q
    ||||| || ||||||||||||||||||||||||||||| ||  |||| || |||||||| |||||| ||  |||||||| ||||||||||||| ||| |     
T  31239822 taaatatcgtctaattctctcttttgttcaaaattaatttttcattaaacaacaacttactgttagatctgtgactgtgcatacttactatcaattacgc 31239723  T
Q  117 ccctgac 123  Q
    |||||||    
T  31239722 ccctgac 31239716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 30748243 - 30748288
Alignment:
Q  77 tgttaggtccctgactgtgtatacttactatcagttaggtccctga 122  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||    
T  30748243 tgttagatccctgactgtgtatacttactgttagttaggtccctga 30748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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