View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18446_low_1 (Length: 871)
Name: NF18446_low_1
Description: NF18446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18446_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 396 - 865
Target Start/End: Original strand, 14611093 - 14611562
Alignment:
| Q |
396 |
cgttctgccgaagaagtttctgagacaacaatggaattgaatactaaaaggagtagtgagtttgattattatctagatgtagacttgcttcctaaacgct |
495 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611093 |
cgttctgccgaagaagattctgagacaacaatggaattgaatactaaaaggagtagtgagtttgattattatctagatgtagacttgcttcctaaacgct |
14611192 |
T |
|
| Q |
496 |
tcggtaattcagtcgagttggctaagagcatacctgtggctgagatccacggtcgccctcttgccgatcatctttccataaagtatggacgcgaaccagg |
595 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14611193 |
tcggtaattcagtcgagttggctaagagcatacctttggctgagatccacggtcgccctcttgccgatcatctttccataaagtatggacgggaaccagg |
14611292 |
T |
|
| Q |
596 |
tttgctgacatctcctcgtgacccactcgaagctagtactgtagctgaagctgtctctgtgatttcttgttggtgcgtatctagcccaacacgcccacgt |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611293 |
tttgctgacatctcctcgtgacccactcgaagctagtactgtagctgaagctgtctctgtgatttcttgttggtgcgtatctagcccaacacgcccacgt |
14611392 |
T |
|
| Q |
696 |
ttaaacaaaatagaacatatacataatgcatttaaataaaacaatataaatttcttgctaactttcctattttattaattatctaaagttacataatttt |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611393 |
ttaaacaaaatagaacatatacataatgcatttaaataaaacaatataaatttcttgctaactttcctattttattaattatctaaagttacataatttt |
14611492 |
T |
|
| Q |
796 |
attagatcttattaaagatacatcatattacatgtaggtacgaagagaagacagaatggggagacagagt |
865 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611493 |
attagatcttattaaagatacatcatattacatgtaggtacgaagagaagacagaatggggagacagagt |
14611562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 14610698 - 14611038
Alignment:
| Q |
1 |
aagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaatcttgactgtgctcactatatctataattgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
14610698 |
aagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaatcttgattgtgatcactatatctataattgcaa |
14610797 |
T |
|
| Q |
101 |
ggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccctcaaagatttgaaggtattgatccctcagat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610798 |
ggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccctcaaagatttgaaggtattgatccctcagat |
14610897 |
T |
|
| Q |
201 |
cgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccattttatgtgggaaccgggtgcatgttcagga |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610898 |
cgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccattttatgtgggaaccgggtgcatgttcagga |
14610997 |
T |
|
| Q |
301 |
gatttgcattgtacggatttgaccctcccacgggtgattgg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14610998 |
gatttgcattgtacggatttgaccctcccacgggtgattgg |
14611038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 14597807 - 14597467
Alignment:
| Q |
1 |
aagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaatcttgactgtgctcactatatctataattgcaa |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| || | |||||||| |||||||||||||||||||| |||| |||||||||||||||||| || |
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|
| T |
14597807 |
aagctggtgccatgaatgcactagttcgagcatctgcaatcttgtcaaatggaccattcattctcaatcttgattgtgatcactatatctataattgtaa |
14597708 |
T |
|
| Q |
101 |
ggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccctcaaagatttgaaggtattgatccctcagat |
200 |
Q |
| |
|
||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
14597707 |
ggcagtacgtgaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttcccccaaagatttgaaggtattgatccctcggat |
14597608 |
T |
|
| Q |
201 |
cgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccattttatgtgggaaccgggtgcatgttcagga |
300 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||| |
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| T |
14597607 |
cgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtccattttatgtgggaaccggatgcatgtttaggc |
14597508 |
T |
|
| Q |
301 |
gatttgcattgtacggatttgaccctcccacgggtgattgg |
341 |
Q |
| |
|
| ||||||||||| ||||||||||||||| | ||||||||| |
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|
| T |
14597507 |
ggtttgcattgtatggatttgaccctccctcaggtgattgg |
14597467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 44634209 - 44634498
Alignment:
| Q |
9 |
gccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaatcttgactgtgctcactatatctataattgcaaggcagtaa |
108 |
Q |
| |
|
||||||||||| ||||||||| | ||| ||| | || ||||| |||||| |||||||||||||||||| ||| || ||||| || | | ||| | | |
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|
| T |
44634209 |
gccatgaatgctcttgttcgaactagtgctgtcatgtccaatggaccattcgttctcaatcttgactgtgatcattacatctacaactccttggccttga |
44634308 |
T |
|
| Q |
109 |
aagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccctcaaagatttgaaggtattgatccctcagatcgctatgc |
208 |
Q |
| |
|
||||| ||||| || ||| | |||| |||||| || ||||| ||| |||| ||||||||||| |||||||||||||| ||| ||||| ||||| |
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|
| T |
44634309 |
gggaaggtatgtgctttatgcttgacagaggtggtgacaggatatgttatgttcaattccctcaaaggtttgaaggtattgaccccagtgatcgatatgc |
44634408 |
T |
|
| Q |
209 |
caatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccattttatgtgggaaccgggtgcatgttcag |
298 |
Q |
| |
|
|| |||||||||||||||||||| | || ||||||||| ||||||||| | ||||||||| | ||||| ||||| || ||||| ||||| |
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|
| T |
44634409 |
aaaccacaacaccgtgttctttgatgtgagcatgagagctcttgatggtttacaaggtccaatgtatgttggaactggctgcatattcag |
44634498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 47919242 - 47919349
Alignment:
| Q |
177 |
tttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccattttatg |
276 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||| ||||||||||| || |||||||| | |||||||||||||||||||| || ||||| || || |||| |
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|
| T |
47919242 |
tttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttaacatgagagcccttgatggacttcaaggcccgttctatg |
47919341 |
T |
|
| Q |
277 |
tgggaacc |
284 |
Q |
| |
|
| |||||| |
|
|
| T |
47919342 |
taggaacc |
47919349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 29918000 - 29917879
Alignment:
| Q |
165 |
ttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaag |
264 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||| |||||||| | |||||||||||||||||||| || |||| |
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|
| T |
29918000 |
ttccctcaaaggtttgagggtattgatccctctgatagatatgctaatcacaacaccgtcttctttgatgttaacatgagagcccttgatggacttcaag |
29917901 |
T |
|
| Q |
265 |
gtccattttatgtgggaaccgg |
286 |
Q |
| |
|
| ||| | ||||| |||||||| |
|
|
| T |
29917900 |
gcccagtctatgtaggaaccgg |
29917879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 41490666 - 41490587
Alignment:
| Q |
153 |
tgctatattcagttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttga |
232 |
Q |
| |
|
|||||| |||| || || |||||||||||||| ||||| || |||||||| ||||||||||||||||| || |||||||| |
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|
| T |
41490666 |
tgctatgttcaatttccccaaagatttgaaggaattgacccatcagatcggtatgccaatcacaacactgtcttctttga |
41490587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 15418587 - 15418526
Alignment:
| Q |
174 |
agatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgg |
235 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| |
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|
| T |
15418587 |
agatttgaagggattgatccctcggatcgatatgcaaatcataacacagtcttctttgacgg |
15418526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 12193357 - 12193254
Alignment:
| Q |
154 |
gctatattcagttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttga |
253 |
Q |
| |
|
||||| |||| || |||||||| |||||||| || || || |||||||| ||||||||||| ||||| || |||||||| | || |||||||| || || |
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|
| T |
12193357 |
gctatgttcaatttcctcaaaggtttgaaggaatcgacccatcagatcggtatgccaatcataacactgtcttctttgatgtcaatatgagagctctcga |
12193258 |
T |
|
| Q |
254 |
tggt |
257 |
Q |
| |
|
|||| |
|
|
| T |
12193257 |
tggt |
12193254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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