View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18446_low_10 (Length: 220)
Name: NF18446_low_10
Description: NF18446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18446_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 28283183 - 28283065
Alignment:
| Q |
1 |
aggaaaacatgctcaaaaaagcacttgaactctacatgaaaattaaaatttccaatctatgggaccaatcccattttgctccagatattggtttgtttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28283183 |
aggaaaacatgctcaaaaaagcacttgaactctacatgaaaattaaaatttccaatctatgggaccaatcccattttgctccagatattggttagtttta |
28283084 |
T |
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| Q |
101 |
gagaagtgcctgttcagag |
119 |
Q |
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| T |
28283083 |
gagaagtgcctgttcagag |
28283065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 28290815 - 28290709
Alignment:
| Q |
13 |
tcaaaaaagcacttgaactctacatgaaaattaaaatttccaatctatgggaccaatcccattttgctccagatattggtttgttttagagaagtgcctg |
112 |
Q |
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|||||||| ||| |||||| |||| |||||| | || ||||||||||||| ||| ||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
28290815 |
tcaaaaaatcaccggaactccacatacaaattatagttgccaatctatgggatcaaaccccttttgctccagaagttggttagttttagagaagtgcctg |
28290716 |
T |
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| Q |
113 |
ttcagag |
119 |
Q |
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||||||| |
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| T |
28290715 |
ttcagag |
28290709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28297877 - 28297765
Alignment:
| Q |
1 |
aggaaaacatgctcaaaaaagcacttgaactctacatgaaa-attaaaatttccaatctatgggaccaatcccattttgctccagatattggtttgtttt |
99 |
Q |
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||||||||| |||||||| |||||||||||||||| | | |||| | || ||||||||||||| ||||||| ||||| | ||||||||||| |||| |
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| T |
28297877 |
aggaaaacaggctcaaaagtgcacttgaactctacaatagatattatagttgccaatctatgggatcaatccccgtttgcacaagatattggttagtttg |
28297778 |
T |
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| Q |
100 |
agagaagtgcctg |
112 |
Q |
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| T |
28297777 |
agagaagtgcctg |
28297765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 28304984 - 28304917
Alignment:
| Q |
52 |
ccaatctatgggaccaatcccattttgctccagatattggtttgttttagagaagtgcctgttcagag |
119 |
Q |
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|||||||||||||||||| || ||||||||||||||| ||| || | |||||||||||||||||||| |
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| T |
28304984 |
ccaatctatgggaccaatgcccatttgctccagatatttgttagtctgagagaagtgcctgttcagag |
28304917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 29557939 - 29557994
Alignment:
| Q |
64 |
accaatcccattttgctccagatattggtttgttttagagaagtgcctgttcagag |
119 |
Q |
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| T |
29557939 |
accaatccccttttgctccagaagttggttagttttagagaagtgcctgttcagag |
29557994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19251437 - 19251356
Alignment:
| Q |
1 |
aggaaaacatgctcaaaaaagcacttgaactctacatgaaaattaaaatttccaatctatgggaccaatcccattttgctcc |
82 |
Q |
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||||||||| ||| ||||| | ||||||||||||||| | |||| | || |||| |||||||||||||||| |||||||| |
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| T |
19251437 |
aggaaaacaggctaaaaaatgtacttgaactctacatatagattatagttgccaaactatgggaccaatccccctttgctcc |
19251356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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